Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_J04
         (839 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M58378-2|AAC41931.1|  670|Homo sapiens synapsin Ib protein.            31   6.9  
BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.       31   6.9  

>M58378-2|AAC41931.1|  670|Homo sapiens synapsin Ib protein.
          Length = 670

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 601 RCSCPTTME-RPSSPGLECPRPPGLERSRSQDWNAPAHQSWNGAPSXQSGAP 753
           R   PTT + RPS PG      P L +  SQD   PA  +  G P  Q   P
Sbjct: 612 RTGPPTTQQPRPSGPGPAGAPKPQLAQKPSQDVPPPATAAAGGPPHPQLKEP 663


>BC039260-1|AAH39260.1|  765|Homo sapiens RBM12B protein protein.
          Length = 765

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = +1

Query: 628 RPSSPGLECPRPPGLERSRSQDWNAPAHQSWNGAPSXQSG 747
           RP      CP        R +DW  P  + + G P   SG
Sbjct: 597 RPWEEDFRCPPEDDFRHPREEDWRRPPPEHFGGLPQSTSG 636


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,910,110
Number of Sequences: 237096
Number of extensions: 1872388
Number of successful extensions: 6248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6225
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)