Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I24
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna ...   202   3e-52
U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna ...   202   3e-52
U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna ...   194   9e-50
AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical ...    29   5.7  
AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily a...    28   7.5  

>U41105-2|AAK68395.1|  596|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform b protein.
          Length = 596

 Score =  202 bits (492), Expect = 3e-52
 Identities = 98/190 (51%), Positives = 128/190 (67%)
 Frame = +3

Query: 150 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 329
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 62  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 119

Query: 330 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 509
               V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK +  +  F    D+
Sbjct: 120 EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 178

Query: 510 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFXKRYLDLI 689
           ++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH HFGLKDKE RF KRYLDLI
Sbjct: 179 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLI 238

Query: 690 LNDKVRQIFI 719
           LN +V+  F+
Sbjct: 239 LNPRVKDNFV 248


>U41105-1|AAA82396.1|  572|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform a protein.
          Length = 572

 Score =  202 bits (492), Expect = 3e-52
 Identities = 98/190 (51%), Positives = 128/190 (67%)
 Frame = +3

Query: 150 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 329
           VA   K  ++ +   P EY+ +R   + A +     D+P+PHKFNV+ISL +FI KY  L
Sbjct: 38  VADAPKVVREADPSDPQEYFNMRVRMIEARRAA--GDNPFPHKFNVTISLTDFITKYTPL 95

Query: 330 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 509
               V+E + +SVAGR+HS RESG+KL+FYD+  EG  IQ+MANAK +  +  F    D+
Sbjct: 96  EKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEGTHIQIMANAKFHTGDVDFVTLHDR 154

Query: 510 LRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFXKRYLDLI 689
           ++RGDI+G  G   +TK GELS+IP  I  L PCLHMLPH HFGLKDKE RF KRYLDLI
Sbjct: 155 IKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRFRKRYLDLI 214

Query: 690 LNDKVRQIFI 719
           LN +V+  F+
Sbjct: 215 LNPRVKDNFV 224


>U41105-3|AAX88810.1|  514|Caenorhabditis elegans Lysyl (k) trna
           synthetase protein1, isoform c protein.
          Length = 514

 Score =  194 bits (472), Expect = 9e-50
 Identities = 90/154 (58%), Positives = 113/154 (73%)
 Frame = +3

Query: 258 DHPYPHKFNVSISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEG 437
           D+P+PHKFNV+ISL +FI KY  L    V+E + +SVAGR+HS RESG+KL+FYD+  EG
Sbjct: 14  DNPFPHKFNVTISLTDFITKYTPLEKEQVVEEI-VSVAGRIHSKRESGSKLVFYDIHGEG 72

Query: 438 AKIQVMANAKLYETEDKFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNIKLLAPCLH 617
             IQ+MANAK +  +  F    D+++RGDI+G  G   +TK GELS+IP  I  L PCLH
Sbjct: 73  THIQIMANAKFHTGDVDFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLH 132

Query: 618 MLPHLHFGLKDKETRFXKRYLDLILNDKVRQIFI 719
           MLPH HFGLKDKE RF KRYLDLILN +V+  F+
Sbjct: 133 MLPHSHFGLKDKELRFRKRYLDLILNPRVKDNFV 166


>AF078781-1|AAC26915.2|  258|Caenorhabditis elegans Hypothetical
           protein B0545.3 protein.
          Length = 258

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 205 YSLGLISSSCLDGFFSAATTGCCEA 131
           YS+G ++S+C +G F   +TG C A
Sbjct: 224 YSVGDVASACSEGTFGDPSTGLCVA 248


>AC024791-2|AAK95891.1|  604|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 63 protein.
          Length = 604

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 141 QPVVAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHP 266
           +P++++     + +E   PN  Y LR  AV + K   K D P
Sbjct: 363 KPLISSSLAEPENKENTKPNSPYSLRKRAVDSSKKPGKSDSP 404


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,108,520
Number of Sequences: 27780
Number of extensions: 325546
Number of successful extensions: 811
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)