Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I23
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...   161   1e-40
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    31   0.28 
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    27   2.6  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   5.9  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   7.8  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score =  161 bits (391), Expect = 1e-40
 Identities = 76/106 (71%), Positives = 93/106 (87%)
 Frame = +1

Query: 226 EISTILEERILGAASKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 405
           E+ +ILEERI GA ++A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35  EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94

Query: 406 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALG 543
           E D VG V+FGND+L++EG++VKRT  IVDVPVGE +LGRVVDALG
Sbjct: 95  EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALG 140



 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 31/44 (70%), Positives = 35/44 (79%)
 Frame = +3

Query: 540 GYPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMXTGIKAVDS 671
           G PIDGKGPI T  R RV +KAPGI+PR SV EPM TG+KA+DS
Sbjct: 140 GNPIDGKGPIKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDS 183


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +3

Query: 540 GYPIDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMXTGIKAVD 668
           G P+D +GPI       +   AP    + +  E + TGIK VD
Sbjct: 146 GEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVD 188



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 424 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALG 543
           + + G + L++ G  V  TG+ + +PVG   LGR+++ +G
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIG 146


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/69 (24%), Positives = 29/69 (42%)
 Frame = -3

Query: 686 PXXTXRVNSLDTSXHRLTHRHPGNDTWRLNTDPHTGFRVDWSLAINRVPKASTTRPRICS 507
           P    R++SLD+S       HPGN T    +      R+   ++ +     +     + S
Sbjct: 168 PNKVQRLSSLDSSQDSFQEEHPGNVTGTTFSSQAPEERIASPISTSSPESLTNQSSSLQS 227

Query: 506 PTGTSTIAP 480
              TS++AP
Sbjct: 228 SLQTSSMAP 236


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
 Frame = -1

Query: 628 DTRGMIPGALIPTLIRDF-VSIGPLPSIGYP----KHPLHAQGSALRRERL 491
           D+ GM+P +L   ++RD+ +S+GP P + Y     ++P  +  S  RR++L
Sbjct: 181 DSEGMLPESL-EEIMRDWDISLGPRPHVLYTVPTGQNPTGSTLSLSRRKKL 230


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 551  NRVPKASTTRPRICSPTGTSTIAP 480
            +R+P  S TRP+I  P   ST  P
Sbjct: 1059 SRLPPVSATRPQIPQPPPVSTALP 1082


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,724
Number of Sequences: 5004
Number of extensions: 61382
Number of successful extensions: 186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)