Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I23
         (856 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   8.3  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 611 TWRLNTDPHTGFRVDWSLAINR 546
           T +L+TDP+T F+V+ S  I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 18  STATSRERSNWLSVCHNYKFVKNVADLRSY 107
           S   S+    WL V  NYK +   A  R Y
Sbjct: 433 SAGFSQTNKTWLPVNENYKSLNLAAQKREY 462


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 34  ASGVTGFPSATIISL*KMSLISARIAGSVARRLPNAATQVS 156
           +SGV     A  +S+  +S+I+AR AG       NAA   S
Sbjct: 628 SSGVLAKKVADRVSMLMISVITARHAGEYVCTAENAAGTAS 668


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = -3

Query: 317 PSPMLKTRPVSSRSALDAAPRILSSRMVEISAALWVVETC 198
           P P  KT+P S     D    I    ++ +    WV   C
Sbjct: 251 PKPQTKTKPTSPYHVSDHKAAITVGVIMGVFLICWVPFFC 290


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 579 ISCRLVPCHQ*GTQSIHYTPKDLLSDGN 496
           I+C L  CH  G       PK++L   N
Sbjct: 164 ITCALQFCHNAGIVHADVKPKNILMSKN 191


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,224
Number of Sequences: 438
Number of extensions: 4751
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)