Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_I22
(900 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988... 32 0.71
02_04_0054 + 19279579-19280772 32 0.71
12_02_0279 - 16704284-16704925 31 1.6
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 31 1.6
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445... 29 3.8
03_04_0175 - 18092055-18092583,18092819-18093378 29 3.8
12_02_0043 + 12762257-12762678,12762751-12762778 29 5.0
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 29 6.7
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 29 6.7
12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368 28 8.8
>11_04_0017 +
12297539-12297697,12298191-12298229,12298457-12298825,
12298921-12299058
Length = 234
Score = 31.9 bits (69), Expect = 0.71
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 239 QVPRAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 117
+VP A ++ GGR D + GR+ G G C RQ K+
Sbjct: 2 EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42
>02_04_0054 + 19279579-19280772
Length = 397
Score = 31.9 bits (69), Expect = 0.71
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = -2
Query: 374 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPRAGL--RRRGGR 201
RH G+ + + T ++ +A+ +L+ KHA L + ++ V RA L RRR R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375
Query: 200 SED 192
D
Sbjct: 376 ESD 378
>12_02_0279 - 16704284-16704925
Length = 213
Score = 30.7 bits (66), Expect = 1.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 405 EEDCQESVEICCTNPITEPVPKPQPDPSXVEGMRL 509
+ED E++E+ P ++P KP+P PS +G+ L
Sbjct: 72 KEDSGETLELLSREPASQPPIKPKPCPSGSQGIVL 106
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 390 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 488
D+RF ++D E++E P+++P +P+P PS
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCPS 198
>12_01_0551 +
4446937-4447353,4449141-4450013,4451206-4451244,
4452339-4452581
Length = 523
Score = 29.5 bits (63), Expect = 3.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 438 CTNPITEPVPKPQPDPSXVEGMRLQ 512
C P P+P+P+P P VE +R++
Sbjct: 37 CPPPPPPPLPRPRPPPPAVEALRIR 61
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 29.5 bits (63), Expect = 3.8
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 390 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 488
D+RF ++D E++E+ P ++P +P+P PS
Sbjct: 226 DLRFIQKDSGETLELHSKEPPSQPPIEPEPCPS 258
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 390 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 488
D+ F +ED E++E+ P ++P +P+P PS
Sbjct: 17 DLHFIQEDSGETLELHSKEPPSQPPIEPEPCPS 49
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 28.7 bits (61), Expect = 6.7
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 581 PGWWLCWTL 607
PGWWLCW L
Sbjct: 689 PGWWLCWWL 697
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 28.7 bits (61), Expect = 6.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = +3
Query: 612 RIVRWSRSPDTSSSRHDWRS----HRLQVRPGQFEGXSRXM 722
RI +W R+PD RH + S +RL V G+ EG R +
Sbjct: 277 RINKWLRAPDMLQKRHCFGSCVINNRLYVAGGECEGIQRTL 317
>12_02_0378 + 18349089-18350402,18351109-18351155,18351266-18351368
Length = 487
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = -3
Query: 496 STXEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSSTPHPVTLALLTSTPSL 338
S+ G G G G G G +T S+ SSP+ STP P + A + P L
Sbjct: 154 SSSRGGGGGRGVGGGSGR----ATPSFPGSSPHHYPSTPTPASAAAAANYPPL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,006,543
Number of Sequences: 37544
Number of extensions: 475352
Number of successful extensions: 2088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2073
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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