Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I14
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.1  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -2

Query: 466 WASASIVRSAASCVNVNAGHCTSFPSTVXGSPXLKSFLLKTREKFVANTQLP----TRVV 299
           W +   + S A+C  +  GH T+   ++  S       +K  E+++A  +LP     R+ 
Sbjct: 354 WLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRIT 413

Query: 298 AILHHR 281
               HR
Sbjct: 414 EYFEHR 419


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
 Frame = -2

Query: 466 WASASIVRSAASCVNVNAGHCTSFPSTVXGSPXLKSFLLKTREKFVANTQLP----TRVV 299
           W +   + S A+C  +  GH T+   ++  S       +K  E+++A  +LP     R+ 
Sbjct: 322 WLTMLSMISGATCYALFLGHATNLIQSLDSSRRQYREKVKQVEEYMAYRKLPREMRQRIT 381

Query: 298 AILHHR 281
               HR
Sbjct: 382 EYFEHR 387


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 519 LLPYQKWDAHLAGSESGVESV 581
           L PY  W+ H  G+  G+ SV
Sbjct: 228 LRPYPNWEWHTVGNCDGLTSV 248


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 400 SFPSTVXGSPXLKSFLLKTREKFVANTQLPTRVVAILHHRIP 275
           S P+T    P + S+        VA++ + T +V I HHR P
Sbjct: 246 SMPTTSDAVPLIGSYF-NCIMFMVASSVVLTVLVLIFHHRTP 286


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 400 SFPSTVXGSPXLKSFLLKTREKFVANTQLPTRVVAILHHRIP 275
           S P+T    P + S+        VA++ + T +V I HHR P
Sbjct: 246 SMPTTSDAVPLIGSYF-NCIMFMVASSVVLTVLVLIFHHRTP 286


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 400 SFPSTVXGSPXLKSFLLKTREKFVANTQLPTRVVAILHHRIP 275
           S P+T    P + S+        VA++ + T +V I HHR P
Sbjct: 246 SMPTTSDAVPLIGSYF-NCIMFMVASSVVLTVLVLIFHHRTP 286


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,656
Number of Sequences: 438
Number of extensions: 3640
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)