Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I12
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...   182   6e-47
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    36   0.007
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme...    27   3.4  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    26   6.0  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   6.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   6.0  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   7.9  

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score =  182 bits (443), Expect = 6e-47
 Identities = 96/245 (39%), Positives = 144/245 (58%)
 Frame = +3

Query: 12  AQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLYHDIARMAFQFCLKYSRKTEFRK 191
           ++ R+DR ++TPW+KFLW++Y   L++LR NA +E +Y  IA  AFQFCLKY RKTEFR+
Sbjct: 139 SKSRTDRALVTPWLKFLWDAYRTVLDILRNNARLEVMYQLIANSAFQFCLKYQRKTEFRR 198

Query: 192 LCDKLRKHLEDICKPTVQTGNVSISKPETQQLNLETRLFQLDCAIQMELWQEAYKAIEDI 371
           LC+ LR HL +  K +    +++++  ET Q +L+ R  QL+ A+++ELWQEA+++IEDI
Sbjct: 199 LCELLRSHLGNASKFSNAPHSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDI 258

Query: 372 HNLMNMSKKTPVAKTMANYYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEELQ 551
           H+L+  SK+ P A  + NYY KL  +F    + L HAAA  + F  +  ++K  T   + 
Sbjct: 259 HSLLTFSKRAPAAVMLGNYYRKLIKIFLVCDNYLLHAAAWNRYF-TFTNVQKPATANFVI 317

Query: 552 KMACQXXXXXXXXXXXXXHPELDRFVXTDXSPVEKAQRLAVLLGLAQPPTRXSLXKDIVR 731
             A                P ++           K  RLA+LL L++ PTR +L KD + 
Sbjct: 318 LSALSIPIIDANKLSG---PSIEA-----EDAKSKNARLALLLNLSKTPTRETLIKDAIS 369

Query: 732 LNVXS 746
             V S
Sbjct: 370 RGVLS 374


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 78  QCLELLRTNAHVETLYHDIARMAFQFCLKYSRKTEFRKLCDKLRKHLEDICK 233
           +  +L+RTN       HD++R+  Q C+K+  K +   +C +L     D+CK
Sbjct: 157 ELFDLIRTNVKQLVFKHDMSRVV-QTCVKFGSKQQRETICAELAGSYVDLCK 207


>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
           Spe2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 421 PTTMGNWHLFSGKLATAYSMLQ 486
           PT   +WHLFS  LA  YS+L+
Sbjct: 167 PTNKNHWHLFS-DLADDYSLLE 187


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 6/34 (17%), Positives = 19/34 (55%)
 Frame = -3

Query: 538 WVMFFFISLYSWKSFSKAAAWNRQWPAFQKTSAS 437
           +++ ++I ++ W  F +   W+ +W  +  T+ +
Sbjct: 285 FLVVYWIGIFIWIGFGRMLGWSDEWQLYINTAVA 318


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
 Frame = +3

Query: 147 FQFCLKYSRKTEFRKLCDKLRKHLEDI-CKPTVQTGNVSISKPETQQLNLETRLFQLDCA 323
           F F   Y+   EF  LC  L + LED+  + ++++        ++ Q      L QL  +
Sbjct: 640 FVFICTYATDDEFAPLCSTLGQRLEDLEDEKSIRSAEFCYIASKSLQSYANLWLKQLATS 699

Query: 324 IQMELWQEAYKA-IEDIHNLMN 386
            +      AY A +E +  LM+
Sbjct: 700 TKTSKAASAYGAYVEQLTKLMD 721


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 61  FGNPTANAWSSFVRMLMW 114
           FG P A  W+ F++ L W
Sbjct: 170 FGTPDAEGWNEFLKCLEW 187


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 314 RLCNSNGVMAGSL*SH*RHPQPNEHV*KNSSRQNYGQLLWETGTCFLESWPL 469
           R+  + G M  +L     HP   + + K        Q+  ET  C+ E+WP+
Sbjct: 277 RMDAAEGQMGKALAFASTHPSSKKRIRKIEEWLPEAQVKRETSDCYHETWPM 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,299,852
Number of Sequences: 5004
Number of extensions: 68024
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)