Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_I12
(858 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 190 2e-48
12_02_1279 + 27510605-27513301 30 2.1
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 29 3.6
01_06_1223 + 35502310-35502753,35503461-35503677,35504023-355041... 29 3.6
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 4.7
02_04_0110 - 19817506-19817847 29 6.3
02_03_0273 + 17173983-17174339,17174423-17174575,17174638-171747... 28 8.3
>01_01_0128 -
1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 190 bits (462), Expect = 2e-48
Identities = 89/185 (48%), Positives = 123/185 (66%)
Frame = +3
Query: 6 EDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAHVETLYHDIARMAFQFCLKYSRKTEF 185
E +DRSDR +TPW KFLWE+Y LE+LR N+ +E LY A AFQFC +Y R TEF
Sbjct: 136 EKGKDRSDREHVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHKAFQFCKQYKRTTEF 195
Query: 186 RKLCDKLRKHLEDICKPTVQTGNVSISKPETQQLNLETRLFQLDCAIQMELWQEAYKAIE 365
R+LC+ +R HL ++ K Q ++ PE+ QL L+TR+ QL A ++ LWQEA++++E
Sbjct: 196 RRLCEIIRNHLANLNKYRDQRDRPDLTAPESLQLYLDTRVEQLKIATELSLWQEAFRSVE 255
Query: 366 DIHNLMNMSKKTPVAKTMANYYGKLALVFWKAGHCLFHAAALLKLFQLYREMKKNITQEE 545
DIH LM+M KKTP + YY KL +FW + L+HA A LKLF L + KN++Q++
Sbjct: 256 DIHGLMSMVKKTPKPSVLVVYYAKLTEIFWISDCHLYHAYAWLKLFYLQKSYNKNLSQKD 315
Query: 546 LQKMA 560
LQ +A
Sbjct: 316 LQLIA 320
>12_02_1279 + 27510605-27513301
Length = 898
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 387 CSLGCGCLQWLYRLPAITPFELHSRAGTILFRGSA 283
CS C CL + YR + + F L+ R G+ LFRG +
Sbjct: 398 CSANCSCLGFFYRNSSKSCFLLNYRIGS-LFRGDS 431
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 29.5 bits (63), Expect = 3.6
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 6 EDAQDRSDRTILTPWVKFLWESYCQCLELLRTNAH-VETLYHDIAR-MAFQFC-LKYSRK 176
+DA RS + + V F+W + + + LRT A + + +A +A Q C K ++K
Sbjct: 386 DDALSRSMKEVKNDKVSFVWTQFSKLISYLRTRAQDPDKVKSCVAEAIALQTCDRKTAQK 445
Query: 177 TEFRKLCDKLRKHL 218
+ + C +L++ L
Sbjct: 446 RKKHQTCPELKEIL 459
>01_06_1223 +
35502310-35502753,35503461-35503677,35504023-35504183,
35504262-35504327,35504474-35504637,35504914-35505028,
35506050-35506202
Length = 439
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +2
Query: 374 QPNEHV*KNSSRQNYGQLLWETG---TCFLESWPLP 472
QPN+ + N YG L+W TG + F++S P P
Sbjct: 310 QPNKLILDNGEEVPYGLLVWSTGVGPSSFVKSLPFP 345
>03_05_1096 -
30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/53 (37%), Positives = 25/53 (47%)
Frame = +2
Query: 464 PLPIPCCSLAETLPAIQGDEEEHHPRGTAEDGVSSTGSGAVCATAISTP*ARS 622
P P P S + QGD + PR +A D S G G V A + S+P A S
Sbjct: 25 PPPPPGSSSSPLNRQKQGDPGQATPRLSAADEGGSVGGGGVAAASGSSPSAVS 77
>02_04_0110 - 19817506-19817847
Length = 113
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -1
Query: 528 SSSSPCIAGRVSARLQHGIGSGQLSRKQVPVSHS 427
SS S C++ R QHG G GQL P + S
Sbjct: 28 SSPSSCLSSESELRQQHGGGGGQLQWSDSPEATS 61
>02_03_0273 + 17173983-17174339,17174423-17174575,17174638-17174700,
17174943-17175026,17175120-17175242,17175466-17175519,
17175669-17175764,17176163-17176258,17177179-17177324,
17178503-17178632,17178697-17179272,17179364-17179462,
17179535-17179687,17179794-17180558,17181384-17181683
Length = 1064
Score = 28.3 bits (60), Expect = 8.3
Identities = 19/100 (19%), Positives = 37/100 (37%)
Frame = +3
Query: 66 ESYCQCLELLRTNAHVETLYHDIARMAFQFCLKYSRKTEFRKLCDKLRKHLEDICKPTVQ 245
ES QC E L+ + H AR+ Q+C + +C + +ED+ K +
Sbjct: 837 ESEKQCSEELKGALEMAMQGH--ARILEQYCELQEKHASLLSMCRTINDGIEDVKKEAAK 894
Query: 246 TGNVSISKPETQQLNLETRLFQLDCAIQMELWQEAYKAIE 365
G L + + + + + W + K ++
Sbjct: 895 AGVRGAESKFINALARQVSILRAEREKERRFWMDENKGLQ 934
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,260,332
Number of Sequences: 37544
Number of extensions: 473771
Number of successful extensions: 1210
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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