Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_I12
(858 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 29 0.055
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 23 3.6
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 4.8
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 6.3
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 29.1 bits (62), Expect = 0.055
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 177 FFASTLNKIGRPCEQYHDTRFPHEHSYE 94
FF +T IG PC++ H +R P + SY+
Sbjct: 44 FFVATSPVIGEPCQRVHSSRIP-DLSYD 70
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 23.0 bits (47), Expect = 3.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 447 VFWKAGHCLFHAAALLKLFQLY 512
V WKAG + A ++F LY
Sbjct: 102 VSWKAGDVMCRIMAFFRMFGLY 123
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 287 DRYVMPSWIKMLFLQWLPCL 306
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 355 DRYVMPSWIKMLFLQWLPCL 374
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 4.8
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = +3
Query: 27 DRTILTPWVKFLWESYCQCL 86
DR ++ W+K L+ + CL
Sbjct: 355 DRYVMPSWIKMLFLQWLPCL 374
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.2 bits (45), Expect = 6.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 384 NMSKKTPVAKTMANYYGKLALVFWK 458
NMSKK+PV K A + +A VF +
Sbjct: 256 NMSKKSPVRK--ATLFLNMASVFMR 278
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,697
Number of Sequences: 438
Number of extensions: 4716
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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