Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_I10
(819 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 239 3e-64
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 239 3e-64
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 29 1.0
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 4.2
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 27 4.2
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 7.4
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 239 bits (586), Expect = 3e-64
Identities = 115/196 (58%), Positives = 137/196 (69%)
Frame = +1
Query: 103 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 282
++ ARP +S+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 283 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 462
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 463 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKV*EINKTKQAVIFLRRLKAWSD 642
ARGH IE+IPE+PLVV D V KTK+AV L+ +KA+ D
Sbjct: 120 KRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179
Query: 643 ILKVYKSQRLRAGKGK 690
++KV S++LRAGKGK
Sbjct: 180 VVKVANSRKLRAGKGK 195
Score = 33.5 bits (73), Expect = 0.037
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 710 QRKGPLIIFNKDQGLTRAF 766
QR+GPL++FN+D G+ +AF
Sbjct: 203 QRRGPLVVFNEDAGIVKAF 221
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 239 bits (585), Expect = 3e-64
Identities = 114/196 (58%), Positives = 137/196 (69%)
Frame = +1
Query: 103 LSVARPLLSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 282
++ ARP +S+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Query: 283 HQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXX 462
HQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 60 HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQNE 119
Query: 463 XXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKV*EINKTKQAVIFLRRLKAWSD 642
ARGH IE+IPE+PLVV D V KTK+AV L+ +KA+ D
Sbjct: 120 KRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRD 179
Query: 643 ILKVYKSQRLRAGKGK 690
++KV S++LRAGKGK
Sbjct: 180 VIKVANSRKLRAGKGK 195
Score = 33.5 bits (73), Expect = 0.037
Identities = 11/19 (57%), Positives = 17/19 (89%)
Frame = +2
Query: 710 QRKGPLIIFNKDQGLTRAF 766
QR+GPL++FN+D G+ +AF
Sbjct: 203 QRRGPLVVFNEDTGIVKAF 221
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 164 APCTVSLFSEYTDNKGRATDRLISLL 87
A C V ++SEYT N G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +2
Query: 650 RCTSL----SVFVLVRVNAQPSSYQRKGPLIIFNKDQGL 754
RCTSL SVF L +VN + G L IF+K Q +
Sbjct: 226 RCTSLDLTNSVFSLSKVNTDCAILTSSGKLKIFSKAQNI 264
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +3
Query: 24 VAWRMVFITAISVYFGGIA-SLK*RNESIGSPTFIVGVF 137
V W +VF+ ++ GG+A LK +S+ F+V F
Sbjct: 343 VGWGLVFVLICVIWGGGLAFQLKYTRKSVAESDFVVTDF 381
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 629 RHGLISLRCTSLSVFVLVRVNAQPSSYQRKGPLII-FNK-DQGLTRAFXT 772
R+ + L C++ + + + ++QP Y R G LI+ F+K DQ + + T
Sbjct: 144 RYPVSKLSCSTKNQILALYTHSQPILYDRDGSLIVRFSKGDQYIRNMYNT 193
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 177 PVRIQGAHTSGPGQ*CSRFYVQELEAALLREQ 272
PV +QG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,964
Number of Sequences: 5004
Number of extensions: 65691
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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