Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I03
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    28   1.6  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    26   6.3  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   8.3  

>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 191 FGVLYYVSLIGIGVHYYHQGDCCRRAHRRLPLLMIKSHEVSTLIQIVIKRAQSMF*KYP 15
           FG L+Y+ L     +  H  +   R +R   + ++K+     L ++V+  A +MF  YP
Sbjct: 32  FGFLHYIELPVFEKYRIHPPEEIARRNRVPQMAVVKAVLFQQLCEVVVGIALAMFEGYP 90


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -1

Query: 195 AFWGPLLCIFDWDWCPLLPPRRL---LSEGTSSSAIAND 88
           AFW PL    D  +   LPPR++   LSE   ++A+ N+
Sbjct: 166 AFWQPLRVYVDMVFLHTLPPRQVINGLSEIIKTAAMWNE 204


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 132 SLVVIVDTNPNQRYIIED 185
           S+VVI D N ++R++IED
Sbjct: 487 SVVVIFDENSSKRFLIED 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,772
Number of Sequences: 5004
Number of extensions: 22377
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)