Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I03
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81509-3|CAB04156.1|  532|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical ...    28   7.8  

>Z81509-3|CAB04156.1|  532|Caenorhabditis elegans Hypothetical
           protein F21A3.5 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 242 KMGVTKCYYSIQDVCEHFGVLYY------VSLIGIGVHYYHQGDCCRRAHRRLPLL---M 90
           K G   CY      C+ FG+LY       V+ I   V +YHQ      +HR   L+   +
Sbjct: 43  KRGAAYCYLVCDKPCKKFGILYLEIGEDNVTTIANQVDFYHQQSSLGYSHRFSALIDAGI 102

Query: 89  IKSHEVSTLIQI 54
           I +H    +++I
Sbjct: 103 INNHVFFMVVRI 114


>AF003740-2|AAM15562.2|  330|Caenorhabditis elegans Hypothetical
           protein C41D11.4 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 180 LLCIFDWDWCPLLPPRRLLSEGTSSSAIAND 88
           L C+F  D  P+L P+RL   G S +   +D
Sbjct: 170 LTCLFSSDMPPILTPQRLRPRGISETRTIDD 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,585,206
Number of Sequences: 27780
Number of extensions: 140779
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)