Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_I03
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 83  T*SLAMADDDVPSDSSLLGGNSGHQSQSKIH 175
           T ++   D+  P D  ++GG++G  + SK+H
Sbjct: 248 TGTIRKCDESSPHDQVIIGGSNGLDT-SKVH 277


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 236  GVTKCYYSIQDVCEHFGVLYYVSLIGIGVHYYHQGDC 126
            G  K Y  +QD+ +      Y  L+  G H+Y  GDC
Sbjct: 1041 GFKKTY--VQDLIQAEASQIYDMLVYEGGHFYVCGDC 1075


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 218 YSIQDVCEHFGVLYYVSLIGIGVHYYH 138
           Y+  D+     V Y+   IGI +H++H
Sbjct: 185 YTASDLDVEHRVAYWREDIGINLHHWH 211


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,333
Number of Sequences: 438
Number of extensions: 1480
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)