Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H23
         (966 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    29   1.3  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    27   3.0  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    26   9.1  

>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +2

Query: 269 SRSNSKDSLAEDNVSQSSLSGGIKGKLVALFSKEQTISETSIANK 403
           S S S  SLA   +S+S+ +    G  V   SK+ T S TS+A+K
Sbjct: 165 STSVSSLSLASTAMSKSASASEFSGSSVTKASKKLTSSPTSVASK 209


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 257 ITKNSRSNSKDSLAEDNVSQSSLSGGIKGKLVALFSKEQTISETSIANKFRL 412
           I   +R NS++ +      +SS+  GIK KLV  +   + + +  I  K +L
Sbjct: 2   IANLNRFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQL 53


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 445 ILQHLHIPLSFQPELISYRRLAYRLL 368
           +L   HI   FQP L+  + L YR+L
Sbjct: 95  LLSSQHISNKFQPHLLKPKSLGYRVL 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,919
Number of Sequences: 5004
Number of extensions: 44997
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)