Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H22
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.6  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   4.5  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   4.5  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.9  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 287
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 440 DVCSVSDNGVIGRIAQVIADALPFLAV 360
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = +1

Query: 244 SEAPXRNCSRSRSLVSLIGLHRPWCLASLRTMTFRARPPTAKKGSASAITCAMRPITPLS 423
           S  P  + S + S  +      P    +  T T  +  P     S +A + +  P+T ++
Sbjct: 320 SSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASSTPLTSVNSTTATSASSTPLTSVN 379

Query: 424 LTEQTSSI*ESAVARVHRTSTS 489
            T  TS+      +    TSTS
Sbjct: 380 STSATSASSTPLTSANSTTSTS 401


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 499 LPTRDRQQIPSRPGRRP 549
           LP+R    +PSRPG RP
Sbjct: 114 LPSRGTPSLPSRPGSRP 130


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 298 GLHRPWCL 321
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,850
Number of Sequences: 5004
Number of extensions: 62580
Number of successful extensions: 188
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)