Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H21
         (902 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    29   0.68 
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   4.8  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    27   4.8  
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    27   4.8  
SPBC21C3.04c |||mitochondrial ribosomal protein subunit L34|Schi...    26   6.4  
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    26   8.4  

>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 384 PHKCGVTRVLNKISGSRTFYH 446
           P  C +    NKI+G RTFYH
Sbjct: 379 PQLCSLNLASNKITGCRTFYH 399


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 358 HXSY*IYRTHINVVSPGCLIRYQA 429
           H +Y + ++HINV+SPG  ++  A
Sbjct: 720 HMAYEMTKSHINVISPGPSLQVNA 743


>SPCC417.08 |tef3||translation elongation factor
            eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 476  PRGYLRPLRLKREAPQSNEEGLQSIPFR-LRRAQRAEHHSL*RREGTXAGLGSHRQAKRK 652
            PRG L     K  A     E L+S  FR L R +  EH SL    G  A L SH + K  
Sbjct: 848  PRGELMETHAKMVAEVDRAEALKSGQFRPLVRKEIEEHCSL---LGLDAELVSHSRIKGL 904

Query: 653  AG 658
            +G
Sbjct: 905  SG 906


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 645 NGKQVSGRDLGQSRHAVVHGDIPEQRV 725
           NGK VS R   + +H    G +PEQR+
Sbjct: 195 NGKGVSFRGKDRCKHCKGSGTVPEQRM 221


>SPBC21C3.04c |||mitochondrial ribosomal protein subunit
           L34|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 629 SHRQAKRKAGIXARSRSVQARR 694
           S+R+ KRK G  +R RSV  RR
Sbjct: 72  SNRKRKRKHGFLSRIRSVNGRR 93


>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 518 VLPA*DAADGDSLAVPVQTFNQYVVVERSTA 426
           VLP     +G  + +PVQ  N + +VE S+A
Sbjct: 588 VLPLYARYEGTEIPLPVQVLNHHNMVENSSA 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,323,388
Number of Sequences: 5004
Number of extensions: 67138
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)