Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H21
         (902 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1053 - 33778057-33778278,33778454-33778546,33778628-337787...    30   2.2  
03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466...    30   2.9  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    29   3.8  
06_03_0654 + 23173253-23173812,23174365-23175262                       29   3.8  
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31...    29   6.7  
05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866     29   6.7  

>02_05_1053 -
           33778057-33778278,33778454-33778546,33778628-33778700,
           33779130-33779204,33779768-33779829,33780282-33780341,
           33780469-33780508,33780766-33781043
          Length = 300

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 224 SEAV-IECTPELMKVTIPMDGDRQVAYLDQIKDYKPCRPEFNGKVATXHIRSTG 382
           SEAV I    +L+   + +DGD  V  L Q KDYK  + E   K  T   RS G
Sbjct: 113 SEAVQIADENDLILAILSLDGDPPVLRLFQEKDYKKHKYEQQKKKRTQQKRSVG 166


>03_03_0250 -
           15845079-15845345,15846303-15846397,15846563-15846671,
           15846981-15847059,15847286-15847355,15847632-15847730,
           15847906-15847930
          Length = 247

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 7   SPTAPSTRTAAISRTPPTNVFLVSPFCFIL 96
           +PT P TRTA    +PP  + L + F F +
Sbjct: 166 TPTLPYTRTAPPPHSPPATIALATSFTFFM 195


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 342 STGRLPRFILDLQDPHKCGVTRVLNKISGSRTFYHNILIEGLNGNREAISVRCVLSG-KH 518
           +TGR P    DL          V  + +  R F  N+L+ GLNG    I+   VL+G K 
Sbjct: 149 TTGRAPEIDEDLHSRQLA----VYGRETMKRLFASNVLVSGLNGLGAEIAKNLVLAGVKS 204

Query: 519 HNLTKRDS 542
            NL   D+
Sbjct: 205 VNLHDDDN 212


>06_03_0654 + 23173253-23173812,23174365-23175262
          Length = 485

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 595 MKKGRHXSRSWEPSSSKTESRYXGEISVSPGTPLSMEIFLNN-ESAXVYGLLVNYMHV 765
           +K+G H  +  EPS  K   R    +S+  G P  ME+     E   +  L++ + HV
Sbjct: 116 LKEGHHKKKDAEPSDKKKRKR----LSIRDGCPAMMEVVRRGPEKWVITKLVLEHTHV 169


>12_01_0038 -
           312152-312748,312930-313362,313572-314440,314535-314584,
           314589-315192,315674-315718,316100-316317,317020-317332,
           318681-318716
          Length = 1054

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +3

Query: 342 STGRLPRFILDLQDPHKCGVTRVLNKISGSRTFYHNILIEGLNGNREAISVRCVLSG 512
           +TGR P    DL          V  + +  R F  N+L+ GLNG    I+   VL+G
Sbjct: 72  TTGRAPEIDEDLHSRQLA----VYGRETMKRLFASNVLVSGLNGLGAEIAKNLVLAG 124


>05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866
          Length = 350

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 25/104 (24%), Positives = 40/104 (38%)
 Frame = -2

Query: 664 PDTCFPFCLTMAPKTGXGAFPSS*RVMFSTLGSSKSKGNALESLFVRLWCFPLKTQRTEI 485
           P +CF   L+M+P T          + FS    +   GN    +   LWCF L  Q+   
Sbjct: 54  PGSCFEDILSMSPST----------IDFSRRFLNLIVGNRTPGV-KSLWCFDLMRQQLFY 102

Query: 484 ASRFPFRPSINMLW*NVRLPDILLSTRVTPHLCGSCRSNMXRGN 353
            +  P    +   W   R P  ++ +   P  C + R++    N
Sbjct: 103 PATPPPPHKVEEFWQKFRPPGTMMDSMGLPFSCFTFRASALNVN 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,697,079
Number of Sequences: 37544
Number of extensions: 483609
Number of successful extensions: 1146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)