Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H21
         (902 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical ...    31   1.1  
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical pr...    29   6.0  
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    29   6.0  

>AF016657-2|AAB93652.1|  366|Caenorhabditis elegans Hypothetical
           protein C16C4.6 protein.
          Length = 366

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 336 LNSTGRLPRFILDLQDPHKCGVTRVLNKISGSRTFYHNILIEGLNGNREAISVRCVLSGK 515
           LNS G    F++DL D     VT+     S + +  +  L   +NG+   +S  C+   +
Sbjct: 230 LNSIGLNFSFVMDLNDLLAINVTKAEVYFSFTLSNVNLFLRHFINGSNPRLSEICIELKR 289

Query: 516 HHNLTKRDSRAFPFDF 563
             NL   DS +F F F
Sbjct: 290 RENL--EDSWSFAFQF 303


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 430 LPDILLSTRVTPHLCGSCRSNMXRGNLPVEFRPARLVIFNLVQISHLTVTVHRYGDLH 257
           LPD+   T    HL   C +   R N+  ++    LV++NL+   HL     +YGDLH
Sbjct: 550 LPDV---TTFVEHLEKFCDAYFHR-NMSTDYTCKDLVLYNLL---HLMNVATKYGDLH 600


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = -2

Query: 430 LPDILLSTRVTPHLCGSCRSNMXRGNLPVEFRPARLVIFNLVQISHLTVTVHRYGDLH 257
           LPD+   T    HL   C +   R N+  ++    LV++NL+   HL     +YGDLH
Sbjct: 550 LPDV---TTFVEHLEKFCDAYFHR-NMSTDYTCKDLVLYNLL---HLMNVATKYGDLH 600


>Z73972-3|CAA98259.1|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.6 protein.
          Length = 305

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 422 IRQSNVLPQHID*RSEREPRGYLRPLRLKREAPQSNE 532
           +++  +  QHI  +S+ E  G+  P +L    PQSNE
Sbjct: 246 VKKVKIEKQHITKKSDVEYSGFTDPYQLYHVVPQSNE 282


>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta
           family protein 4,isoform a protein.
          Length = 1080

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 189 HRSSRSTVI-LSGL*ELDTLISNTEYITSNI*QDKTKWRH*KHICW 55
           +R+ R T++ L+ L   DT +  TE + S +   +  W++   +CW
Sbjct: 464 YRNMRETLVYLTHLDNKDTEVKMTEKLASQVNGGEFSWKNLNRLCW 509


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,643,582
Number of Sequences: 27780
Number of extensions: 390163
Number of successful extensions: 1003
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)