Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H18
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    34   0.030
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    31   0.28 
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    28   1.9  
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    27   2.6  
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...    27   3.4  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    27   3.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    27   3.4  
SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|ch...    27   4.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   4.5  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   7.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.8  

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
 Frame = -2

Query: 577  CAVLGAEAVRKDTLRGIAWRSSIWVVVNITRIFIRSIATVLFAVTEKTAFNASRVAASEE 398
            CA    EA   D    I + S  W  +  T +  RS++T  ++     ++N S +   EE
Sbjct: 1351 CASFAVEAKINDWSYYIDFGSESWERIRNTPLK-RSLSTTFYSFL--ISYNDSFIKKHEE 1407

Query: 397  AVLTEWFFSV-----QERLYFTLLVLELTIFHSIFPIAGLFLNIEE 275
             VLT WF S+          FT+L+L+  + + I     + + IEE
Sbjct: 1408 KVLTVWFESLGALDEDHAAQFTILLLQKNLKNPILLNLPISVKIEE 1453


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 599 RVSRRGSLCRPRSRSSQEGHTARNRMAELYLGRCQYHKNFHQIHRHS 459
           R  + G++   R RS   G     R+A + +  C++H N   +  HS
Sbjct: 121 RREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHS 167


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 290 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQ-DGFL 403
           +Q    K  +KN K+KN   ++KPLL TE   CQ D FL
Sbjct: 149 EQLIQIKVCMKNEKMKNLMEQLKPLLQTE---CQFDKFL 184


>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 398 SRLDRVVLQCTREALFYAPCS 336
           SRL++V L   RE LFY  CS
Sbjct: 198 SRLNQVSLSIDREGLFYGQCS 218


>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 659 IELYKEIFNGKRKXQTVAISXPTYFVSHKY 748
           I++ + IF G RK + + IS   Y   H+Y
Sbjct: 113 IDIIETIFRGARKGKGLVISPKDYSTRHRY 142


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -2

Query: 331 LTIFHSIFPIAGLFLNIEEQTGRATYSLYSRGSTLDDVATVV 206
           L IF SI  + G F +  + TG+A  + +S  + +D V  V+
Sbjct: 11  LQIFGSILFLLGFFPHKNDSTGKAMSNQFSPPAVIDQVVFVM 52


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 548 EGHTARNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRV 429
           EGH  +NRM+E Y      + NF  +   +P +   K+ V
Sbjct: 682 EGHYLKNRMSERYKHLMNLNANFRLLLTGTPLQNNLKELV 721


>SPBC211.08c |||ribonuclease PH-like|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 39  VSLLWPRASCSPARLLMVTD 98
           V+ +W R +CSP+RL  +T+
Sbjct: 211 VTQVWERGTCSPSRLSFLTE 230


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/31 (38%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = +2

Query: 461 CGDG--SDENSCDIDNDPNRAPPCDSSQCVL 547
           CG+G   D   CD   D    P CD   C L
Sbjct: 318 CGNGIVEDGEECDCGEDCENNPCCDGKTCKL 348


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 245 IQAIRCPAGLFFDIEKQTCDWKDAVKN 325
           ++A+RCP  L+   + QT  WK   K+
Sbjct: 32  VRALRCPIWLWPTYDAQTIPWKKKKKS 58


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = +2

Query: 500 NDPNRAPPCDSSQCVLPD-CFCSEDGTVI---PGDLPARDVPQMITITFDDAINNNNIEL 667
           +DP+ +PP  SS    PD  FC+   T +     D+  +     + +TF D    + + +
Sbjct: 142 SDPSSSPPPSSSLLKTPDNDFCARPETFVKSDTADIKLQIHQNNLVLTFLDTTTVSKVNI 201

Query: 668 YKEI 679
             EI
Sbjct: 202 VLEI 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,593
Number of Sequences: 5004
Number of extensions: 64367
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)