Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H18
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103 31 1.2
04_04_0261 + 24007790-24009098,24009191-24011118 29 3.6
04_03_0992 + 21502060-21502065,21502688-21502863,21506178-215062... 29 4.7
02_04_0207 + 20933319-20933427,20933503-20933701,20933785-209339... 29 4.7
06_03_0345 + 19758188-19758382,19759857-19759952,19760061-197601... 29 6.2
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 28 8.3
02_01_0733 - 5477110-5477421,5478146-5478166 28 8.3
01_06_0881 + 32692345-32692497,32693167-32693286,32693382-326934... 28 8.3
>08_02_0579 + 18949742-18949909,18951483-18951563,18951762-18952103
Length = 196
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 407 CGDSTCIERGLFCNGEKDCGD-GSDENSCDIDND 505
CGD+ C G+FC G D S+++S D+ +D
Sbjct: 157 CGDTGCFADGIFCPGNGDSDPAASNDSSVDMHSD 190
>04_04_0261 + 24007790-24009098,24009191-24011118
Length = 1078
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 9 VVIPSWRATPVSLLWPRASCSPARLLMVT 95
+++PSWRA LW SC A ++VT
Sbjct: 54 LLLPSWRAATDCCLWEGVSCDAASGVVVT 82
>04_03_0992 +
21502060-21502065,21502688-21502863,21506178-21506259,
21506394-21506495
Length = 121
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 749 CTCA-RQNKWXLISQPFGFCA 690
CTC R N W LIS PFG +
Sbjct: 97 CTCQLRYNNWPLISPPFGIAS 117
>02_04_0207 +
20933319-20933427,20933503-20933701,20933785-20933931,
20934683-20934764,20935542-20935697,20935948-20936121,
20936278-20936349,20937012-20937083,20937322-20937440,
20937540-20937625,20937747-20937799,20938076-20938153
Length = 448
Score = 29.1 bits (62), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 566 EDGTVIPGDLPARDVPQMITITFDDA 643
EDG + GD R VP ++T FDDA
Sbjct: 48 EDGQLGHGDAEDRPVPTVLTAAFDDA 73
>06_03_0345 +
19758188-19758382,19759857-19759952,19760061-19760144,
19760504-19760573,19760934-19761838,19763661-19764287
Length = 658
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 335 KNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 508
+ +ER+ L E +G ++C ST G+K+ DG D+ D +P
Sbjct: 441 RGEERRGVDKLRCHEEFVTEGHISCSVSTDDSDSSTSKGDKNAKDGKDKGDKDKSEEP 498
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = -2
Query: 490 TRIFIRSIATVLFAVTEKTAFNASRVAASEEAVLTEWFFSVQERLYFTLLVLELTIFHSI 311
T++ + S+A +LF + F +V + +++ WF + + L+V E+TI +
Sbjct: 224 TQVVLISVA-ILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAF 282
Query: 310 FP 305
P
Sbjct: 283 NP 284
>02_01_0733 - 5477110-5477421,5478146-5478166
Length = 110
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = +2
Query: 305 WKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFC--NGEKDCGDGSD 478
W +K+ K + R+ L Y C D LA GD TC R L +G D DG
Sbjct: 34 WTVRLKHTKGRRPRRERAVLRYGWHRFCADNGLAVGD-TCFFRALRSAGSGAGDVDDGDG 92
Query: 479 EN 484
++
Sbjct: 93 DH 94
>01_06_0881 +
32692345-32692497,32693167-32693286,32693382-32693474,
32694197-32694283,32696052-32696063,32696553-32696625,
32697073-32697182,32697608-32697658,32698154-32698242,
32698518-32698599,32698680-32698793,32699015-32699094,
32699749-32699884,32700210-32700280,32700363-32700457,
32700467-32700597,32701009-32701398
Length = 628
Score = 28.3 bits (60), Expect = 8.3
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 413 DSTCIERGLFCNGE-KDCGDGSD--ENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVI 583
D C+ G FCNG GD S+ +N+ + D +R P S +L G V
Sbjct: 444 DEHCLYAGAFCNGHGYGTGDSSNKHQNANSVPFDDSRTPSDQSLSNILSTTRGYIKG-VC 502
Query: 584 PGDLPARDVPQMITITFDDAINNNN 658
PG A+ + + D++I N+
Sbjct: 503 PGLTHAQKLGISYSAEEDNSIQQNS 527
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,587,160
Number of Sequences: 37544
Number of extensions: 498821
Number of successful extensions: 1608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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