Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H17
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    32   0.085
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.4  
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.8  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    27   4.2  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   4.2  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   7.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   7.4  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.8  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   9.8  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    25   9.8  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 32.3 bits (70), Expect = 0.085
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +1

Query: 55  TRSRPRHVTAGVPQGSALSPLLFSLYINDIPRSLE 159
           T +R ++   G PQGS +SP+L ++Y++ +   +E
Sbjct: 410 TENRYKYDIVGTPQGSIVSPILANIYLHQLDEFIE 444


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 268 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 384
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +2

Query: 32  RSDIESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLWRPIW-RSSPMTPPSTTRV 208
           ++D+    RVP P  S   + K+PPS       I +  P L  P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 209 GRRRCFIDDFRPQLPP 256
             +   I D     PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 498 DVGAECHPTVEGDA*IFDLRGPRYGLVEHRDWANG 394
           DV A C  +++     +DLR PR+ +    DW NG
Sbjct: 336 DVLATC--SIDSSVHCWDLRSPRFPVNSFYDWHNG 368


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 41  IESRERVPGPVTSQPESRKAPPSPRYYSVCISTIYPGLWRPIWRSSPMTPPS 196
           + +++R   P+   P  R  PP  R  +  I  I PGL      SS  TP S
Sbjct: 413 LNNQQRESAPLL--PRKRGRPPKKRQENAEIRNITPGLTDSSVHSSSATPQS 462


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +2

Query: 329 VALRTPR*ASLSRLGASITPPPPFAQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRY 508
           +A R+   ++L +   ++       +S  S  PY  P  S    SP      S  ++ RY
Sbjct: 248 LAQRSGPTSALHKFATALQQQHQMQKSTSSNIPYANPAPSGFNGSPRNGDVASLASNYRY 307

Query: 509 ATVPPS 526
           A  PP+
Sbjct: 308 AKQPPT 313


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 85  GVPQGSALSPLLFSLYINDI 144
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 450 FDLRGPRYGLVEHRDWANGGGGVIDAPSRERD 355
           F+L    Y L E  +W  GG   + AP+ E D
Sbjct: 160 FELDVSNYPLPEGEEWMVGGSFGVMAPNNEED 191


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 304 STAVLFKRGRPPNTTLSIPLPTRRVNNPAPAVRP 405
           ST +L K+ RP       PLP    + P+  VRP
Sbjct: 382 STGLLSKQHRPRKNINFTPLPPSTPSKPSTFVRP 415


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 636 YTCIGHDGAYASFVECHLISKGHFTSP 556
           Y  +G DG Y S  EC   S+  FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 278  GASTLTPRKAQRCSSKGVALRTPR*ASLSRLGASITPPPP 397
            GAS+  P    R SS       P  AS++    +I  PPP
Sbjct: 889  GASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPP 928


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +1

Query: 316 LFKRGRPPNTTLSIPLPTRRVNNPAPAVRPITMFDQPIP---WAPKVKYLGVTLDSRMTF 486
           L ++ RP   +L+       V+  AP++R     ++  P   W PK K  G     R   
Sbjct: 408 LLEKLRPEMISLNADF-IGNVDRAAPSLRKAEAEEEKPPEEKWVPKAKARGKNSALRRYL 466

Query: 487 RPHIKTVRDR 516
           R H + V D+
Sbjct: 467 RKHARNVVDQ 476


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 88  VPQGSALSPLLFSLYINDIPRSLETHLALFADDTAIYYSCRKK 216
           +P    L PLL  L +  +   L+ +  LF    A   +CRK+
Sbjct: 204 IPVNITLYPLLKGLDVGKVTLVLKEYCTLFITSKAYSSTCRKE 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,489,332
Number of Sequences: 5004
Number of extensions: 78745
Number of successful extensions: 246
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)