Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H12
(855 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM079947-1|CAL04093.1| 100|Homo sapiens immunoglobulin heavy ch... 34 0.76
AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein pr... 33 1.3
AF471330-1|AAQ05505.1| 127|Homo sapiens Ig heavy chain variable... 33 1.3
DQ118267-1|AAZ94749.1| 79|Homo sapiens immunoglobulin heavy ch... 33 1.7
AM079884-1|CAL04030.1| 101|Homo sapiens immunoglobulin heavy ch... 33 1.7
AL445068-2|CAI22520.1| 366|Homo sapiens protein ( Human DNA seq... 33 1.7
AL050350-5|CAI42513.1| 366|Homo sapiens protein ( Human DNA seq... 33 1.7
AM079202-1|CAL03348.1| 101|Homo sapiens immunoglobulin heavy ch... 31 4.0
AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens ... 31 5.3
AF282168-1|AAG03039.1| 437|Homo sapiens DRC3 protein. 31 5.3
AF282167-1|AAG03038.1| 437|Homo sapiens DRC3 protein. 31 5.3
AM079105-1|CAL03251.1| 101|Homo sapiens immunoglobulin heavy ch... 31 7.1
BC142617-1|AAI42618.1| 888|Homo sapiens sema domain, transmembr... 30 9.3
AY358939-1|AAQ89298.1| 888|Homo sapiens semaphorin Z protein. 30 9.3
AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein pr... 30 9.3
AB209278-1|BAD92515.1| 518|Homo sapiens semaphorin 6B isoform 3... 30 9.3
AB022433-1|BAB20669.1| 888|Homo sapiens semaphorin Z protein. 30 9.3
>AM079947-1|CAL04093.1| 100|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 100
Score = 33.9 bits (74), Expect = 0.76
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -1
Query: 609 LSAASSG-HFGLPRRTLVFKDEGTIIETVPLPGSGIGTGFPFAQRALFFIIFKNYKKTRH 433
LS A+SG +F + + V + G +E V GSG GT + + + F I N K T H
Sbjct: 23 LSCAASGFNFNIYAMSWVRQAPGKGLEWVSSGGSGGGTYYADSVKGRFTISRDNSKNTVH 82
Query: 432 IDIRSLLELRID*LASNYCSR 370
+ + S LR + A YC++
Sbjct: 83 LQMNS---LRAEDTAVYYCAK 100
>AL133561-1|CAB63715.1| 580|Homo sapiens hypothetical protein
protein.
Length = 580
Score = 33.1 bits (72), Expect = 1.3
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Frame = -3
Query: 373 TRNPSP----RQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTR 233
TR+PS R SRASL PPR++PT P +PR HRA PTR
Sbjct: 168 TRSPSTASLTRTPSRASLTRW--PPRASPTRTPPRESPR---MSHRASPTR 213
>AF471330-1|AAQ05505.1| 127|Homo sapiens Ig heavy chain variable
region, VH3 family protein.
Length = 127
Score = 33.1 bits (72), Expect = 1.3
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -1
Query: 609 LSAASSGH-FGLPRRTLVFKDEGTIIETVP-LPGSGIGTGFPFAQRALFFIIFKNYKKTR 436
LS A+SG F V + G +E V + GSG T + + + F I N K T
Sbjct: 20 LSCAASGFTFNNYAMNWVRQAPGKGLEWVSVISGSGDSTYYADSVKGRFTISRDNSKNTL 79
Query: 435 HIDIRSLLELRID*LASNYCSRETLLHVSPPGPRWSICYYHQDL 304
++ + SL R + +C++ VS PGPRW YY D+
Sbjct: 80 YLQMNSL---RAEDTGVYFCAKGL---VSTPGPRW-YYYYAMDV 116
>DQ118267-1|AAZ94749.1| 79|Homo sapiens immunoglobulin heavy chain
VDJ region protein.
Length = 79
Score = 32.7 bits (71), Expect = 1.7
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -1
Query: 522 LPGSGIGTGFPFAQRALFFIIFKNYKKTRHIDIRSLLELRID*LASNYCSRETLLHV 352
+ GSG T + + F I N K T H+ + SL R++ A YCS+++ +HV
Sbjct: 15 ISGSGDSTYYTNLAKGRFXISRDNSKNTVHLQMNSL---RVEDTAIYYCSKDSGMHV 68
>AM079884-1|CAL04030.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 32.7 bits (71), Expect = 1.7
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 609 LSAASSGH-FGLPRRTLVFKDEGTIIETVP-LPGSGIGTGFPFAQRALFFIIFKNYKKTR 436
LS A+SG FG + V + G +E V + GSG T + + + F I NYK T
Sbjct: 23 LSCAASGFTFGTFAMSWVRQAPGKGLERVSAISGSGGSTFYADSVKGRFTISRDNYKNTL 82
Query: 435 HIDIRSLLELRID*LASNYCSR 370
H+ + S LR + A +C+R
Sbjct: 83 HLQMNS---LRAEDTAVYHCAR 101
>AL445068-2|CAI22520.1| 366|Homo sapiens protein ( Human DNA
sequence from clone RP1-71D21 on chromosome 6. ).
Length = 366
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTRYG 227
PR +SR + Y+ R+ P SG TP P C R RP R G
Sbjct: 65 PRGASRRQVTYVRSGRRAPPGGGGSG-TPEPGCCAPRGRPRRKG 107
>AL050350-5|CAI42513.1| 366|Homo sapiens protein ( Human DNA
sequence from clone RP1-261K5 on chromosome 6q21-22.1
Contains the 3' end of the SLC22A16 gene for solute
carrier family ).
Length = 366
Score = 32.7 bits (71), Expect = 1.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTRYG 227
PR +SR + Y+ R+ P SG TP P C R RP R G
Sbjct: 65 PRGASRRQVTYVRSGRRAPPGGGGSG-TPEPGCCAPRGRPRRKG 107
>AM079202-1|CAL03348.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 31.5 bits (68), Expect = 4.0
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 609 LSAASSGH-FGLPRRTLVFKDEGTIIETVP-LPGSGIGTGFPFAQRALFFIIFKNYKKTR 436
LS A+SG F T V + G +E + + GSGIGT + + + F I N K T
Sbjct: 23 LSCAASGFTFSNYAMTWVRQAPGKGLEWISAISGSGIGTYYADSVKGRFTISRDNSKNTL 82
Query: 435 HIDIRSLLELRID*LASNYCSR 370
++ + S LR + A YC++
Sbjct: 83 YLQVNS---LRAEDTAVYYCAQ 101
>AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ43705 fis, clone TESOP2001818. ).
Length = 321
Score = 31.1 bits (67), Expect = 5.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 503 PIPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 610
P+P G+ T ++PS+L+ ++ G P W ED+ R
Sbjct: 228 PLPPKGTETFFCVLPSALRAALSCG-PSWGEDSGPR 262
>AF282168-1|AAG03039.1| 437|Homo sapiens DRC3 protein.
Length = 437
Score = 31.1 bits (67), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 400 RLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPF 263
R R++ ++ P+PR S A PPRSAP P L P P+
Sbjct: 390 RAARDRAAQSQGPAPRNRSSARAR---TPPRSAPGCRPRALAPGPW 432
>AF282167-1|AAG03038.1| 437|Homo sapiens DRC3 protein.
Length = 437
Score = 31.1 bits (67), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -3
Query: 400 RLTREQLLFTRNPSPRQSSRASLEYLLLPPRSAPTEAPSGLTPRPF 263
R R++ ++ P+PR S A PPRSAP P L P P+
Sbjct: 390 RAARDRAAQSQGPAPRNRSSARAR---TPPRSAPGCRPRALAPGPW 432
>AM079105-1|CAL03251.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 30.7 bits (66), Expect = 7.1
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 609 LSAASSGH-FGLPRRTLVFKDEGTIIETVP-LPGSGIGTGFPFAQRALFFIIFKNYKKTR 436
LS A+SG F + V + G +E V + GSG T + + R F I N+K T
Sbjct: 23 LSCAASGFTFTTSGMSWVRQAPGKGLEWVSGISGSGPTTNYGDSVRGRFTISRDNHKNTL 82
Query: 435 HIDIRSLLELRID*LASNYCSR 370
H+ + S LR++ A YC++
Sbjct: 83 HLQMDS---LRVEDTAVCYCAK 101
>BC142617-1|AAI42618.1| 888|Homo sapiens sema domain, transmembrane
domain (TM), and cytoplasmic domain, (semaphorin) 6B
protein.
Length = 888
Score = 30.3 bits (65), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTR 233
P + AS LLL P AP + P+ P P L+ ARP R
Sbjct: 740 PLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGR 781
>AY358939-1|AAQ89298.1| 888|Homo sapiens semaphorin Z protein.
Length = 888
Score = 30.3 bits (65), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTR 233
P + AS LLL P AP + P+ P P L+ ARP R
Sbjct: 740 PLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGR 781
>AL117481-1|CAB55954.1| 319|Homo sapiens hypothetical protein
protein.
Length = 319
Score = 30.3 bits (65), Expect = 9.3
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -3
Query: 361 SPRQSSRASLEYLLLPPRSAPTEAPS--GLTPRPFCALHRARPTRYGLMIPN*KFSITR 191
SP RAS PPR++PT PS LT P A P+R LM SITR
Sbjct: 11 SPMTPPRASPR---TPPRASPTTTPSRASLTRTPSWASPTTTPSRASLMKMESTVSITR 66
>AB209278-1|BAD92515.1| 518|Homo sapiens semaphorin 6B isoform 3
precursor variant protein.
Length = 518
Score = 30.3 bits (65), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTR 233
P + AS LLL P AP + P+ P P L+ ARP R
Sbjct: 370 PLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGR 411
>AB022433-1|BAB20669.1| 888|Homo sapiens semaphorin Z protein.
Length = 888
Score = 30.3 bits (65), Expect = 9.3
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -3
Query: 358 PRQSSRASLEYLLLPPRSAPTEAPSGLTPRPFCALHRARPTR 233
P + AS LLL P AP + P+ P P L+ ARP R
Sbjct: 740 PLLPASASSSLLLLAPARAPEQPPAPGEPTPDGRLYAARPGR 781
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,688,195
Number of Sequences: 237096
Number of extensions: 3105472
Number of successful extensions: 9752
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 9046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9748
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -