Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H11
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 47 3e-06
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 35 0.012
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.2
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 3.2
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 27 4.2
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 4.2
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 5.6
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 7.4
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 9.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 25 9.7
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 47.2 bits (107), Expect = 3e-06
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Frame = +1
Query: 151 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 318
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 319 ASWSDGELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 480
S+++ EL A + P + +++Q + A++ + D L ++T+L
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYL 150
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 35.1 bits (77), Expect = 0.012
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Frame = +1
Query: 31 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 210
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 211 ADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQWASWSDGELL-PASC-AWV 366
ADG L + Y+ E L + +A + +W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 367 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 480
+ G + + ++ + + + + +LK+ + + RT+L
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYL 155
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 58 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 237
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 238 SN 243
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +2
Query: 287 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 382
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = +1
Query: 268 ESLRGGDLATQA--RVWQWASWSDGELLPASCAWVFPYLG 381
+S+ G +L R QWASW+ G L CA + LG
Sbjct: 15 QSVSGNNLCADCSTRGVQWASWNLGIFLCLRCATIHRKLG 54
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 425 TYWPP*KYWTDIFSHAPSLVT 487
TY PP Y D+FS APS+ +
Sbjct: 257 TYLPPFNYDHDVFSFAPSVAS 277
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 227 STFPSALSNAGTFPAGNFFKKSSDL 153
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 238 SNAIAYYVANESLRGGDLATQARVWQWAS 324
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +2
Query: 317 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 424
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/52 (19%), Positives = 28/52 (53%)
Frame = +3
Query: 492 ESHLPMSLSSXTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSL 647
E+ +P+ + L + +++ +P+V S + + + +P V+ ++GS+
Sbjct: 509 EASIPIDELTDALKNYHENLEEPTVESEEVEANDSYYRIDEKPMVTVLLGSM 560
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 LFPKTPTMAAGVLYTYPENFRAYKALIAAQYSG-TDVKVAPNFV-FGE 147
L+ + A G +YT E+FRA K+L S T V+ FV FGE
Sbjct: 321 LYLEAALPALGSVYTIQESFRAEKSLTRRHLSEFTHVEFELPFVNFGE 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,689
Number of Sequences: 5004
Number of extensions: 68481
Number of successful extensions: 216
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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