Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H10
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    29   0.62 
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    27   4.4  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    27   4.4  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    27   4.4  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          26   5.8  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   7.7  
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    26   7.7  

>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 18/74 (24%), Positives = 38/74 (51%)
 Frame = +2

Query: 380 KICLNCEEKMVSLQLFILECNKTQEALSSMLMDLETSELDEKKDDILLTVTDVHIKSEVK 559
           K+C   +E++ S Q F +   +  + L++  +DL+T +LD  + ++     D +I+S VK
Sbjct: 211 KLCERKDEEIRSSQAFNMTLREENDTLAAQNLDLQT-QLDRLQREL-----DTNIRSNVK 264

Query: 560 DENADYTINTAVPD 601
            +         +P+
Sbjct: 265 SKPKKIVTTGGIPE 278


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 293 LLDESNRNVLNLIEDFLRIIICENDTLPTKICLNCEEKMVSLQLFILECNKT 448
           L D+ N         +LR  + E   LPT +  +  +  V +   IL+CN+T
Sbjct: 117 LCDDGNFRESRWFTPWLRPRVVETHYLPTFVAKSLNQTTVPIGDAILQCNET 168


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = +2

Query: 296 LDESNRNVLNLIEDFLRIIICENDTLPT--KICLNCEEKMVSLQLFILECNKTQEALSSM 469
           + E N     L+ D LR++   + T  T  ++  + E  + +L+ F L  N  Q      
Sbjct: 618 ITERNSASPTLLHDSLRLLFSMDLTEMTDPQLSRHFELLINNLKKFFLTNNDLQIIQGCT 677

Query: 470 LMDLETSELDEKKDDILLTVTDV 538
           ++ L    +   K+D+ L VTD+
Sbjct: 678 ILFLRLDSIPALKEDLKLLVTDI 700


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 278 EFSKDLLDESNRNVLNLIED 337
           E+S DL  +SNRN +N ++D
Sbjct: 644 EYSADLASKSNRNEINTMQD 663


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 218 NY*KRMPIIKDLCRLCATQDEFSKDLLDESNRNVL 322
           +Y K+  +IK     C  +   SKDL DE++ N +
Sbjct: 124 HYDKKSHLIKWSIEWCLHESSTSKDLTDEASENTI 158


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
 Frame = +2

Query: 296 LDESNRNVLNLIEDFLRIIICENDTLPTKICLNCEEKMV-SLQLF--ILECNKTQEALSS 466
           LDESN +    I   L  I+  +DT+      +C E ++ SL+    I+E   +++ +++
Sbjct: 533 LDESNASAAEEIIPLLSNILQSSDTIVVSKAYSCLETIIESLKTSPNIIETIISEDLITT 592

Query: 467 MLMDLETSELDEKKDDILLTVTDVHIKSEVKDENADYT---INTAVPDLLAYQKSEELCD 637
           ++  L  S    K   + L V  +HI S +   ++      +N  +PD++     E LC 
Sbjct: 593 IVNALTNSTSQNK--SMHLQVQLLHIISSLCQSSSALILPFLNHNLPDVM----YEMLCG 646

Query: 638 YQSNDIS 658
              +D S
Sbjct: 647 IPPSDTS 653


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 RPTLQSFCKEAFWKCSLFYI 157
           R TL    K+ FW+ ++FYI
Sbjct: 294 RKTLPGAVKQVFWRVAIFYI 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,655
Number of Sequences: 5004
Number of extensions: 56446
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)