Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H06
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 366 e-102
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 187 2e-48
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 185 6e-48
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 138 1e-33
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 28 1.9
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 4.5
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 4.5
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 4.5
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |... 27 4.5
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 26 5.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 7.8
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce... 26 7.8
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 26 7.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 366 bits (901), Expect = e-102
Identities = 167/230 (72%), Positives = 198/230 (86%)
Frame = +2
Query: 119 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 298
KIREEYPDR+M T+SV P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I
Sbjct: 154 KIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFAN 213
Query: 299 TLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 478
TLK+ +P+Y DLNHLVS M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL
Sbjct: 214 TLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPL 273
Query: 479 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNI 658
+ GS ++A++VPELTQQMFDA NMM A DPRHGRYLTVAA+FRG++SMKEVDEQ+ ++
Sbjct: 274 AAIGSSSFQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFRGKVSMKEVDEQIRSV 333
Query: 659 QNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFIGNSTAIQELSSAFGN 808
Q KNS+YFVEWIP+NV AVC +PP+ LKM+ATFIGNST+IQE+ G+
Sbjct: 334 QTKNSAYFVEWIPDNVLKAVCSVPPKDLKMSATFIGNSTSIQEIFRRLGD 383
Score = 32.3 bits (70), Expect = 0.090
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +1
Query: 7 LDVVRKEAESCDCLQG 54
LDVVR+EAE+CD LQG
Sbjct: 117 LDVVRREAEACDALQG 132
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 187 bits (456), Expect = 2e-48
Identities = 80/206 (38%), Positives = 128/206 (62%)
Frame = +2
Query: 119 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 298
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R
Sbjct: 160 RLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219
Query: 299 TLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 478
L + PTY +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + ++P+
Sbjct: 220 NLDIERPTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPI 279
Query: 479 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNI 658
S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + +I
Sbjct: 280 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRTGRYMATCLLYRGDVIPRDVQAAVTSI 339
Query: 659 QNKNSSYFVEWIPNNVKTAVCDIPPR 736
+++ + FV+W P K +C PP+
Sbjct: 340 KSRRTIQFVDWCPTGFKIGICYEPPQ 365
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 185 bits (451), Expect = 6e-48
Identities = 80/209 (38%), Positives = 127/209 (60%)
Frame = +2
Query: 119 KIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR 298
++ EY + +SV P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R
Sbjct: 156 RLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215
Query: 299 TLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPL 478
L + P+Y +LN L++ +S +T LRF G LN DL + N+VP+PR+HF + +AP+
Sbjct: 216 NLDIERPSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPI 275
Query: 479 TSRGSQQYRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNI 658
S + + +V E+T Q F+ N M CDPR GRY+ ++RG + ++V + I
Sbjct: 276 VSAAKAFHESNSVQEITNQCFEPYNQMVKCDPRAGRYMATCLLYRGDVIPRDVQAAVTTI 335
Query: 659 QNKNSSYFVEWIPNNVKTAVCDIPPRGLK 745
+ K + FV+W P K +CD PP+ ++
Sbjct: 336 KAKRTIQFVDWCPTGFKIGICDRPPQHIE 364
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 138 bits (333), Expect = 1e-33
Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 8/232 (3%)
Frame = +2
Query: 119 KIREEYPDRIMNTYSVVP-SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICF 295
++ + YP +I+ TYSV P S VSD VV+PYN+ L++ +L N D +DN AL I
Sbjct: 156 RLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAA 215
Query: 296 RTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAP 475
L PT+ N LVS MS TT LR+PG +N DL + +++P PR HF + + P
Sbjct: 216 DRLHTQNPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTP 275
Query: 476 LTSRGSQQYRAL---TVPELTQQMFDAKNMMAACDP-RHGRYLTVAAIFRGRMSMKEVDE 643
T++ ++ +A+ TV ++ +++ KN M + +P + ++++ I +G +V +
Sbjct: 276 FTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMVSVNPSKKSCFISILDIIQGEADPADVHK 335
Query: 644 QMLNIQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMAATFIGNSTAIQEL 790
+L I+ + + F+ W P +++ A+ P +++ + N T+I L
Sbjct: 336 SLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGLMLANHTSIASL 387
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -3
Query: 528 VSSGTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTASLRRSAFSCPGNRRHVVTPDMV 352
++ G + R C + A+ K+ +GK T++ + + P RRH+ D+V
Sbjct: 350 IAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAELSTPPSKRRHIDDADLV 408
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 4.5
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 230 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 409
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 410 RKLAVNMV 433
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 4 WLDVVRKEAESCDCLQGIPTDTLARRRHRFRYGHPPHLQNQRRVP 138
W+D+ ++ C+ ++ LAR + FRY H NQ+++P
Sbjct: 338 WIDIAQEFEIPIRCIHLQSSEELARHNNVFRYIH----HNQKQLP 378
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 417 SLRRSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQI 286
+LR NR ++ P ++ R R YVG +F RKQI
Sbjct: 679 ALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQI 722
>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = -3
Query: 612 RKMAATVR*RPWRGSQAAIMFLASNICCVSSGTVSARYCWLPRDVSGAKPGMK 454
++MA+ R + A F A I CV + R W+ + G GM+
Sbjct: 496 KRMASLTNSREMQIQHAPTTFAAETIQCVLPIRIEKRVVWMEDGMEGGMEGMQ 548
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = -3
Query: 690 HSTKYEEFLFWMLSICSSTSFMDMRPRKMAATV 592
+ST +E+ + W++++ SST MRP + ATV
Sbjct: 199 NSTVFEDIMSWVVAMSSST----MRPIRHTATV 227
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 585 RPWRGSQAAIMFLASNICCVSSGTVS-ARYCWLPRDVSGAKPGMKK 451
+P SQ A + S + C+ S Y ++PR G+KP K+
Sbjct: 550 KPTGASQWAAVACTSVVSCIIMAAASLCEYLFVPRRFPGSKPIWKR 595
>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 584 RYLTVAAIFRGRMSMKEVDEQMLNIQNKN--SSYFVEWIPNNVK 709
RYLT + + +++K V + +LN N++ + F+ W P K
Sbjct: 297 RYLTGKVVEQEYLTVKLVSKTLLNFSNQSLCKAVFIVWDPPGSK 340
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/53 (20%), Positives = 26/53 (49%)
Frame = +2
Query: 605 IFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPRGLKMAATFI 763
++ + ++ + + ++NI+ N S W+PN + +P G K++ I
Sbjct: 343 VYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEKVSEMLI 395
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,977,126
Number of Sequences: 5004
Number of extensions: 54408
Number of successful extensions: 203
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -