Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H04
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 294 1e-80
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 163 4e-41
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 159 4e-40
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 130 2e-31
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 84 2e-17
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 81 1e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 80 4e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 54 2e-08
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.11
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.61
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 1.4
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.3
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.3
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 26 5.7
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.7
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 7.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 10.0
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 294 bits (721), Expect = 1e-80
Identities = 140/180 (77%), Positives = 149/180 (82%)
Frame = +3
Query: 150 DEEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQS 329
+EE+AALV+DNGSG + P P +MVGMGQKDSYVGDEAQS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR-PRHHGIMVGMGQKDSYVGDEAQS 60
Query: 330 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 509
KRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMT
Sbjct: 61 KRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMT 120
Query: 510 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRXGL 689
QI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+R L
Sbjct: 121 QIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 180
Score = 65.7 bits (153), Expect = 8e-12
Identities = 31/46 (67%), Positives = 33/46 (71%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFXPPPSGXIVRDIKXXLCYVXLDFXQXM 832
GRDLTDYLMKIL ERGY+F IVRDIK LCYV LDF Q +
Sbjct: 182 GRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQEL 227
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 163 bits (395), Expect = 4e-41
Identities = 78/170 (45%), Positives = 111/170 (65%), Gaps = 1/170 (0%)
Frame = +3
Query: 168 LVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSKRGILT 347
+ +DNGSG+++ P R VM QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHER-VMPSSIQKDMFVGSEAQNLRGLLK 70
Query: 348 LKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 524
++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +E
Sbjct: 71 IQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYE 130
Query: 525 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 674
T N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI
Sbjct: 131 TLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAI 180
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/42 (45%), Positives = 23/42 (54%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFXPPPSGXIVRDIKXXLCYVXLDF 820
GRD+TDYL L + G+ IVR+IK CYV DF
Sbjct: 187 GRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDF 228
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 159 bits (386), Expect = 4e-40
Identities = 79/177 (44%), Positives = 115/177 (64%), Gaps = 2/177 (1%)
Frame = +3
Query: 156 EVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXV-MVGMGQ-KDSYVGDEAQS 329
E A +V+DNG+G+V+ P P +R G Q KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGR-PILRAEEKTGNVQIKDVMVGDEAEA 60
Query: 330 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 509
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM
Sbjct: 61 VRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMC 120
Query: 510 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILR 680
+ MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + R
Sbjct: 121 ETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGR 177
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +2
Query: 695 GRDLTDYLMKILTERGYSFXPPPSGXIVRDIKXXLCYVXLD 817
GRD T YL+ +L +GY+F VR++K LCYV D
Sbjct: 182 GRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYD 222
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 130 bits (314), Expect = 2e-31
Identities = 62/134 (46%), Positives = 85/134 (63%), Gaps = 9/134 (6%)
Frame = +3
Query: 300 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 476
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 477 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 632
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 633 TVPIYEGYALPHAI 674
+P+ EGY + +I
Sbjct: 193 IIPVAEGYVIGSSI 206
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 199 KAGFAGDDAPRAVFPS 246
K G+AG+DAP VFP+
Sbjct: 18 KLGYAGNDAPSYVFPT 33
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 84.2 bits (199), Expect = 2e-17
Identities = 54/170 (31%), Positives = 84/170 (49%)
Frame = +3
Query: 153 EEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSK 332
+EV+A+V+D GS + + +P E R + G++ Y +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLF---GEEYIY-----KSN 60
Query: 333 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 512
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 61 PG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLE 119
Query: 513 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 662
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L
Sbjct: 120 TMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 199 KAGFAGDDAPRAVFPSXRGK 258
+ GF+G+D P+ V PS G+
Sbjct: 24 RIGFSGEDIPKCVLPSYCGE 43
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 81.4 bits (192), Expect = 1e-16
Identities = 39/125 (31%), Positives = 73/125 (58%), Gaps = 3/125 (2%)
Frame = +3
Query: 288 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 464
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 465 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 638
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 639 PIYEG 653
P+ G
Sbjct: 181 PVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 79.8 bits (188), Expect = 4e-16
Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 2/181 (1%)
Frame = +3
Query: 153 EEVAALVVDNGSGYVQGXXXXXXXXXXXVPLXSWEGPAIRXVMVGMGQKDSYVGDEAQSK 332
EE+ +LV+D GS + + +P S+ G +R + G ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILP--SYYG--VRSDVTG---RNKYVVDELQIH 60
Query: 333 RGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 506
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 61 APIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQI 120
Query: 507 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRXG 686
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I +
Sbjct: 121 MEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQS 180
Query: 687 L 689
L
Sbjct: 181 L 181
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 54.4 bits (125), Expect = 2e-08
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 4/103 (3%)
Frame = +3
Query: 357 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 524
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 525 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 653
P +A + ++ LYA G G+V+D G + PI +G
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDG 214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +3
Query: 417 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 560
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.11
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 541 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 675
P T+P P T PV P S P+ P P PS+ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = +1
Query: 538 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 675
PP +P P P VPP P+T P P PS P P+
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPP-----PSTAPPVPTPSAGLPPVPVPT 1233
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +1
Query: 538 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTRDTHSPTPS 675
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 7.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +1
Query: 538 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTRDTHSPTPS 675
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 517 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 675
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 517 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 675
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/66 (25%), Positives = 23/66 (34%)
Frame = +1
Query: 520 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSPTPSCVXDLAGS 699
S + P + S C+ T +PP T P ST T +P P G+
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327
Query: 700 RPHRLP 717
LP
Sbjct: 328 SSSPLP 333
Score = 25.8 bits (54), Expect = 7.5
Identities = 19/50 (38%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 529 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTRDTHSPTPS 675
ST P T S S P VPP S T + PT ST SP P+
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 280
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 1.4
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 562 PCSRCTRPVVPPVSCWTPATVSPTPCPSTRDTHSP 666
PC+ + PPV+C TP P C + H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +1
Query: 562 PCSRCTRPVVPPVSCWTPATVSPTPCPST 648
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 538 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 645
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 5.7
Identities = 20/63 (31%), Positives = 26/63 (41%)
Frame = -3
Query: 767 RSAVVXTSXRAR*GSS*GSL*GRDPAKSXTQDGVGECVSLVDGHGVGDTVAGVQHDTGGT 588
R +V T AR G + + GR ++ + G G G G GDTV GG
Sbjct: 99 RGSVNRTRTSARNGGTLLKVRGR--GQNVQRGGRGGRYGSSGGRGAGDTVVSRSSGAGGA 156
Query: 587 TGR 579
GR
Sbjct: 157 RGR 159
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 459 LLTEAPLNPKANREKMTQIMFETFN 533
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 4 GHTQASIALSRDTGRQSVSCFSRLAVTAGRL 96
G Q+S +S RQSV C SR + + RL
Sbjct: 78 GSRQSSCIVSNARKRQSVHCLSRSPIPSTRL 108
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 473 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRR 622
+PQ + E++ D++R++ +RH RR P +A + R H + R R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR 1474
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,756
Number of Sequences: 5004
Number of extensions: 72994
Number of successful extensions: 255
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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