Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H04
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.0  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 658 HSPTPSCVXDLAGSRP 705
           H+P P C+ +L G  P
Sbjct: 330 HTPEPDCIHELLGHMP 345


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 429  LRVAPEEHPVLLTEAPLNPKANREKM 506
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 214 LRNRPCTXPEPLSTTNAAT 158
           LR  PC  P P S  N A+
Sbjct: 623 LRTLPCLLPRPKSENNFAS 641


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 214 LRNRPCTXPEPLSTTNAAT 158
           LR  PC  P P S  N A+
Sbjct: 591 LRTLPCLLPRPKSENNFAS 609


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 223 HHLLRNRPCTXPEPLSTTNAATSSS 149
           HHL   +    PEP  ++ ++T SS
Sbjct: 342 HHLHVAKQMASPEPPKSSESSTGSS 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,782
Number of Sequences: 438
Number of extensions: 5729
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)