Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H02
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M...    54   3e-08
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    31   0.25 
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    28   1.3  
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...    28   1.8  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    27   4.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   5.4  
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   5.4  
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    26   7.1  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    25   9.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   9.4  

>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
 Frame = +3

Query: 252 ESTRATPVSDSVAAGFVAQATCLAASLLNQPLRYKITLLGSASKILDE-TPDLPDPNIPL 428
           E  +   V  + + GF+A      +  L + L Y I    S S ILD  TPD+P    PL
Sbjct: 183 EPDKINNVEMAASIGFLAHLLQTLSKYLEKELAYPILCASSRSSILDTLTPDIPTRIFPL 242

Query: 429 FARGGDTTLFRYALFLLNKCIAQLMWGRGLPVTDIGPTLXNLQRLL 566
           +       LF +A++LLN+ +   +   GLP+      L N ++LL
Sbjct: 243 YPATRPIELFEHAIYLLNQDVNDFLETFGLPIDQSMDILRNFKKLL 288


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = +2

Query: 326 LPAQPAPALQDNPPRI----RQQDTGRNTRSPRSKHPA 427
           LP  P+P +    P +    +Q+D+G +++SP S HP+
Sbjct: 68  LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPS 105


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 180 IFYVEERGPSKWSIVNV-PLPICGDESTRATPVSDSVAAGF 299
           I ++ E   SKW  V   P+P    + T   PVSD+V++ F
Sbjct: 112 ILHITEGHASKWGEVKKKPIPKTKSKPTSHAPVSDNVSSTF 152


>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/69 (28%), Positives = 31/69 (44%)
 Frame = +2

Query: 176 PHILRRREGPIEMVNSKRSVAHMRGREHPSDPRERLRGGGVRSAGHVSGRLPAQPAPALQ 355
           P  L   EG  E+ N+K +   MRG  H +   ++     + +  H + + PA   P + 
Sbjct: 286 PRSLGGPEG--EVRNAKLADLVMRGSSHGNKTSQKSTIKNIENEDHENTKSPAVAIP-ID 342

Query: 356 DNPPRIRQQ 382
            N PR R Q
Sbjct: 343 PNQPRYRSQ 351


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 441 GDTTLFRYALFLLNKCIAQLMWGRGLPVTDIGPTLXNLQRLLI 569
           GD TLF + LFLL+K I        L ++D       LQ+ L+
Sbjct: 304 GDFTLFHFTLFLLSKIIL-----LNLKISDYEKAFSTLQQALL 341


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
 Frame = +2

Query: 206 IEMVNSKRSVAHMRGREHPSDPRERLRGGGVRSAGHVSGRLPAQPAPALQDNPPRIRQQD 385
           +++   KRSV+    R++   PR        RS    SG++    AP  Q   P      
Sbjct: 612 VQVAQQKRSVSQNYNRQYSFQPRPATPSNPPRSLPPPSGQV---NAPMSQTPNPISFAYQ 668

Query: 386 TGRNTRSPRSKHPAVRSWRRHHAVPVRAIPAQQV-HSP 496
            G    +P  +  +  S+    A P+R      V H+P
Sbjct: 669 HGTPLATPTMRANSFNSYPASSAEPIRRPATTTVGHTP 706


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 661 LRKDWARGQSPSDSQRLLPNSFDDSDILHGVIKSLCRFXRVG 536
           LR  WA   S S S  LLP+  + +++  G +K L    + G
Sbjct: 34  LRDGWASSNSSSSSSLLLPDENEGNEVF-GSLKGLVTQSKFG 74


>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -2

Query: 450 WCRRHERTAGCLDLGD-RVFRPVSC 379
           +C+ HE T G   +GD + F P  C
Sbjct: 203 FCKNHESTTGHFTIGDEKKFNPFMC 227


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 586 DILHGVIKSLCRFXRVGPMSVTGSPRPHIS-WAMH 485
           D  HG   S C +   G   +TGSP  HI+ W+++
Sbjct: 292 DYKHGFSVSCCCWLPDGLSFITGSPDCHITHWSLN 326


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 23/99 (23%), Positives = 38/99 (38%)
 Frame = +2

Query: 260 PSDPRERLRGGGVRSAGHVSGRLPAQPAPALQDNPPRIRQQDTGRNTRSPRSKHPAVRSW 439
           PS PR       ++++       P  P+P    NP +    +   +TRS  +K P+  S 
Sbjct: 541 PSRPRLPRVASPLKTSPVKLAVTPQAPSPLPSSNPSQASLTEESLSTRSSPTK-PSTTSL 599

Query: 440 RRHHAVPVRAIPAQQVHSPADVGSRAARHGHRTDPXEPA 556
           R    V   A    +  S +  G   A    ++ P  P+
Sbjct: 600 RSQSLVNRFASSTLKAPSSSSKGVSNAASSKQSFPSSPS 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,278
Number of Sequences: 5004
Number of extensions: 61100
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)