Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H02
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 31 1.3
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 30 1.7
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical pr... 28 6.7
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.7
U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical pr... 28 6.7
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.7
Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical p... 28 8.9
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 28 8.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 8.9
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 30.7 bits (66), Expect = 1.3
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Frame = +2
Query: 173 APHILRRREGPIEMVNSKRSVAHMRGREHPSDPRERLRGGGVRSAGHVSGRLPAQPAPAL 352
A H L R +G ++V+ + + + PSD R GGG R R P +
Sbjct: 73 AEHALDRTDG--KLVDGRELRVTLAKYDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSR 130
Query: 353 QDNPPRIRQQDTGRNTRSPRSKHPAVRSWRRHHA-VPVRAIPAQQVHSPADVGSRA 517
+P R R + TRSP S+ RR ++ R+ P ++ SP + SR+
Sbjct: 131 SRSPRRSRSR-----TRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRS 181
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 322 PPPCSTSPCATR*PSSDPPARYWTKHPISQIQTSRCSLVAATPRCSGTRYSCSTSA 489
PPP +T+P T P++ P T+ S Q S+ P S + + A
Sbjct: 160 PPPTTTTPTTTLKPTTSPEKHSTTEEATSPSQNETTSVTTQNPTTSNQKNETTDEA 215
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.7
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 9/114 (7%)
Frame = +2
Query: 164 ADAAPHILRRREGPIEMVNSKRSVAHMRGREHPSDPRERLRGGGVRSAG----HVSGRLP 331
A +P RRR P + + A R + P+ R R +S R
Sbjct: 310 ASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSK 369
Query: 332 AQPA-----PALQDNPPRIRQQDTGRNTRSPRSKHPAVRSWRRHHAVPVRAIPA 478
+ PA P+ +PP R++ + +RSP K + RR ++ PA
Sbjct: 370 SPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPA 423
>Z72510-3|CAA96653.1| 366|Caenorhabditis elegans Hypothetical
protein F53B7.4 protein.
Length = 366
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +2
Query: 290 GGVRSAGHVSGRLPAQPAPALQDNPPRI--RQQDTGRNTRSPRSKHPAVRSWRRHHAVPV 463
G R + R+ QPAPAL + P + R+Q + P + P V R+ +
Sbjct: 278 GHTRHRHSILSRINFQPAPALSEIEPEVEDREQSPQESICEPPAHQPEVFLRRQSLPFGL 337
Query: 464 RAIP-AQQVHSPAD 502
A+P + ++S D
Sbjct: 338 TAVPVSNDLNSKTD 351
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 385 YWTKHPISQIQTSRCSLVAATPRCSGTRYSCSTSA 489
YWTKH + + + ++ TP T S +TSA
Sbjct: 421 YWTKHRVKSTKEPKTTIFTTTPVPCPTTTSTTTSA 455
>U23449-6|AAC24300.2| 937|Caenorhabditis elegans Hypothetical
protein K06A1.6 protein.
Length = 937
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 365 PRIRQQDTGRNTRSPRSKHPAVRSWRRHHAVPVRAIPAQQVHSPADVGSRAA 520
P +R+ + T +P +KH + R W +P++ V P+ GS A+
Sbjct: 185 PVVRRTAADQETSNPVNKHRSSRYWIEDEG-DYHILPSEHVWLPSSTGSSAS 235
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 28.3 bits (60), Expect = 6.7
Identities = 25/87 (28%), Positives = 33/87 (37%)
Frame = +2
Query: 200 GPIEMVNSKRSVAHMRGREHPSDPRERLRGGGVRSAGHVSGRLPAQPAPALQDNPPRIRQ 379
GP+E + +S G E +D ER RGGG S + +D P R
Sbjct: 35 GPLENEENLKSSTGGGGGEDDNDRGER-RGGGGGGDRDRSRSRERRRGGGGRDEPRRRGG 93
Query: 380 QDTGRNTRSPRSKHPAVRSWRRHHAVP 460
D R+ R P + P R VP
Sbjct: 94 DDEARSRREPEPQKPREPKKYRFWDVP 120
>Z96102-3|CAE17868.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 257 HPSDPRERLRGGGVRSAGHVSGRLPAQPAPALQDNPPRIRQQDTGRNTRSP 409
H +RLR GH+SG + + A D P ++ Q D G N + P
Sbjct: 19 HAKSVGQRLRRDVEADKGHISGADQHRGSRAAGDKPSQLSQPD-GENPKRP 68
>Z81491-16|CAE17747.1| 686|Caenorhabditis elegans Hypothetical
protein D1086.9 protein.
Length = 686
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 257 HPSDPRERLRGGGVRSAGHVSGRLPAQPAPALQDNPPRIRQQDTGRNTRSP 409
H +RLR GH+SG + + A D P ++ Q D G N + P
Sbjct: 19 HAKSVGQRLRRDVEADKGHISGADQHRGSRAAGDKPSQLSQPD-GENPKRP 68
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 278 RLRGGGVRSAGHVSGRLPAQPAPALQ--DNPPRIRQQ 382
R+ G G SAG +LP+ AP+LQ D+ P++ Q
Sbjct: 748 RMGGSGPSSAGPGGSQLPSLSAPSLQRADSMPQLPSQ 784
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 278 RLRGGGVRSAGHVSGRLPAQPAPALQ--DNPPRIRQQ 382
R+ G G SAG +LP+ AP+LQ D+ P++ Q
Sbjct: 748 RMGGSGPSSAGPGGSQLPSLSAPSLQRADSMPQLPSQ 784
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = +2
Query: 335 QPAPALQDNPPRIRQQDTGRNTRSPRS--KHPAVRSWRRHHAVPVRAI-PAQQVHSPADV 505
Q PA + P +QQ N P+ +HPA + +HH+VP + P H P
Sbjct: 29 QVPPAPDASMPTPQQQQQQPNLPPPQQPYEHPAQQHPPQHHSVPPNSFAPPPGQHHPQHP 88
Query: 506 G 508
G
Sbjct: 89 G 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,132,580
Number of Sequences: 27780
Number of extensions: 377444
Number of successful extensions: 1370
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1368
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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