Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_H01
(856 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 48 7e-06
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 43 4e-04
02_01_0316 + 2125283-2125687,2125768-2125881,2125986-2126099,212... 39 0.004
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 35 0.072
07_03_0406 + 17785046-17785408,17786411-17786479,17786764-177868... 33 0.22
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 33 0.22
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 8.3
02_02_0598 + 12003994-12004317 28 8.3
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 48.4 bits (110), Expect = 7e-06
Identities = 45/165 (27%), Positives = 70/165 (42%), Gaps = 3/165 (1%)
Frame = +1
Query: 94 GQRICIRGWVHRLRRQGK-SLAFLTLRDGT--GYLQCVLHGLLCQTYNALVLSTESSVVL 264
G+R+ + GWV R QGK + AFL L DG+ LQ ++ + A + +T +SV++
Sbjct: 40 GERVVVGGWVKTGREQGKGTFAFLELNDGSCASNLQVLVDAAVHPL--APLTATGTSVLV 97
Query: 265 YGKLEAVPEGKKAPGGHELTADYWELIGLAPPGGADAILNEEALPDVQLDNRHIMIRGEN 444
G+L+ PEG K EL D +G P + L +++ D H+ R
Sbjct: 98 EGELKKPPEGAKQ--RVELRVDRVIEVGEVDPAAYPLPKTKLTLENLR-DVVHLRSRTNT 154
Query: 445 TSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGGSTLFK 579
V R R + A F + CEG +F+
Sbjct: 155 IGAVARIRHQLACATHRFFDENGFLYVHTPIITTSDCEGAGEMFQ 199
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 42.7 bits (96), Expect = 4e-04
Identities = 51/192 (26%), Positives = 75/192 (39%), Gaps = 25/192 (13%)
Frame = +1
Query: 94 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVL-----HGLLCQTYN-ALVLSTESS 255
G+ + IRG +R K +AF+ LR+ +QCVL G+ Q A LS ES
Sbjct: 98 GRSVLIRGAAQAIRPVSKKMAFVVLRESMSTVQCVLVASADAGVSTQMVRFATSLSKESI 157
Query: 256 VVLYGKLEAVPEGKKAPGGH---ELTADYW--ELIGLAPPGGADAILNEEALP------- 399
V + G + E KA ++ Y I P DA +E +
Sbjct: 158 VDVEGVVSLPKEPLKATTQQVEIQVRKIYCINRAIPTLPINLEDASRSEAEIEKAEQAGE 217
Query: 400 -------DVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCE 558
D +L+ R I +R + R + V FRE+F S+ + E
Sbjct: 218 KLVRVGQDTRLNYRAIDLRTPANQAIFRIQCQVENKFREYFLSKNFVGIHSPKLIAGSSE 277
Query: 559 GGSTLFKFXYFG 594
GG+ +FK Y G
Sbjct: 278 GGAAVFKLQYNG 289
>02_01_0316 +
2125283-2125687,2125768-2125881,2125986-2126099,
2126271-2126561,2126658-2126768,2127317-2127370,
2127555-2127634,2127912-2128027,2128141-2128382
Length = 508
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 94 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHG 207
G+ + +RG H +R G+ +AFL LR G+ +QCV+ G
Sbjct: 54 GRAVRVRGAAHAVRAVGRRVAFLVLRQGSSTVQCVVGG 91
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +1
Query: 400 DVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGGSTLFK 579
D +LD R I +R + R + + FR+ S + EGG+ +FK
Sbjct: 184 DKRLDFRVIDLRTPANQAIFRVQCEIENIFRQVLLSEGFVGIHTPKLIGGSSEGGAAVFK 243
Query: 580 FXYFG 594
Y G
Sbjct: 244 LDYNG 248
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 35.1 bits (77), Expect = 0.072
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 102 DMHQRMGTSSPAPR*ISGIPDPA*WHWVPTVRSTWFTMSDLQCSSPIYGVIC-GLVWKIR 278
D+H G S AP + +P+ W + + T + S+P+ C L W++
Sbjct: 343 DLHDYSGDISSAPL-VLKLPNIG--RWYIAIETVNITQMNSTASTPLLDTTCFSLEWQVT 399
Query: 279 GCARGKEGSGWS 314
GC GK G+ S
Sbjct: 400 GCLNGKAGTNCS 411
>07_03_0406 +
17785046-17785408,17786411-17786479,17786764-17786868,
17787297-17787346,17787363-17787489,17788084-17788221,
17788863-17788940,17789141-17789218,17789318-17789386,
17789720-17789803,17789895-17789981,17790364-17790459,
17790541-17790615,17790762-17790888,17791027-17791142
Length = 553
Score = 33.5 bits (73), Expect = 0.22
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 23/184 (12%)
Frame = +1
Query: 94 GQRICIRGWVHRLRRQGKSLAFLTLRDGT--GYLQCVLHGLLCQTYNAL-VLSTESSVVL 264
G+++ +RGWV R Q +++ F+ + DG+ +QCVL + Y+ + ++T +SV++
Sbjct: 99 GKQLAVRGWVRTCRAQ-RTVTFVEVNDGSCLSNMQCVLTP-DTEGYDQIDSITTGASVLV 156
Query: 265 YGKLEAVPEGKK----------------APGGHELTADYW----ELIGLAPPGGADAILN 384
G + + GK+ PG H +A +W IG + P + I
Sbjct: 157 EGVIASSQGGKQKVELKVSKISVAVDNIIPGKHASSAFFWFHFFVQIGESDP-TSFPIQK 215
Query: 385 EEALPDVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGG 564
+ A + H+ R V R R A+ A + F + CEG
Sbjct: 216 KRASREFLRTVAHLRPRTNTFGAVARVRNALAYATHKFFQDNGFVWVASPIITASDCEGA 275
Query: 565 STLF 576
F
Sbjct: 276 GEQF 279
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 33.5 bits (73), Expect = 0.22
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Frame = +1
Query: 94 GQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHGLLCQTYNAL-VLSTESSVVLYG 270
G+R+ + GWV L R L FLTLRD +G +Q + Y + L ES V + G
Sbjct: 101 GRRVRLCGWV-ALHRAHAGLTFLTLRDRSGTVQVTTLPEYPEVYAVVNKLRVESVVAVEG 159
Query: 271 KLEAVP----EGKKAPGGHELTADYWELIGLA------PPGGADAILNEEALPDVQLDNR 420
+ + P G E+ AD ++ P AD + E+ +++L R
Sbjct: 160 VVRSRPTEAINTDMKTGAIEVAADNIYVLNSVTRSLPFPITTADTV-KEKFPEEIRLRFR 218
Query: 421 HIMIRGENTSKVLRARAAVTRAFREHFASR 510
+ +R LR R V + R + R
Sbjct: 219 VLDLRRPQMQSNLRLRHNVVKHIRRYLEDR 248
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 152 RDLPWRRRRCTHPLMHIL*PRCSVVSHIFTTVAF 51
R+ P+ +R C +P H+L C +V + +T+ +
Sbjct: 790 RERPFMKRPCRYPKCHVLFMACILVHGLISTLGY 823
>02_02_0598 + 12003994-12004317
Length = 107
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 34 EDPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGK 147
ED P + +T EHRG ++ +R HR RR G+
Sbjct: 16 EDNDAPASVSGSSADTDEHRGLKVALR---HRGRRSGR 50
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,401,937
Number of Sequences: 37544
Number of extensions: 484956
Number of successful extensions: 1255
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -