Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_H01
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...   240   1e-63
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    37   0.016
Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    36   0.028
Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical p...    28   9.7  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    28   9.7  

>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score =  240 bits (587), Expect = 1e-63
 Identities = 111/186 (59%), Positives = 137/186 (73%)
 Frame = +1

Query: 37  DPSLPKATVVKICETTEHRGQRICIRGWVHRLRRQGKSLAFLTLRDGTGYLQCVLHGLLC 216
           D SLP+A V+KI E+ +HR QR+ I+ WVHRLRRQGKSL FL LRDG G+LQCVL+  LC
Sbjct: 102 DKSLPEAKVIKIGESVQHRDQRVSIKAWVHRLRRQGKSLMFLVLRDGYGFLQCVLNDKLC 161

Query: 217 QTYNALVLSTESSVVLYGKLEAVPEGKKAPGGHELTADYWELIGLAPPGGADAILNEEAL 396
           Q+Y+A+ LSTE+SV +YG ++A+P+GK AP GHELT DYWE+IG AP GG D +LNE A 
Sbjct: 162 QSYDAVTLSTETSVQVYGIIKALPDGKSAPDGHELTVDYWEVIGKAPAGGIDNVLNESAG 221

Query: 397 PDVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGGSTLF 576
            DV LDNRH++IRGEN S++LR RAA TRA R+HF +  Y             EGGSTLF
Sbjct: 222 VDVMLDNRHLVIRGENASRILRIRAAATRAMRDHFFAAGYTEVAPPTLVQTQVEGGSTLF 281

Query: 577 KFXYFG 594
              Y+G
Sbjct: 282 GLDYYG 287



 Score = 32.3 bits (70), Expect = 0.45
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +2

Query: 593 GEXAYLTXXSXLYLXTCLATLG 658
           GE AYLT  S LYL TC A LG
Sbjct: 287 GEPAYLTQSSQLYLETCNAALG 308


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 385 EEALPDVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGG 564
           ++  PD      H+  R    + +LRAR+A+ R   E F SR +            CEGG
Sbjct: 95  DDLSPDNLRKKTHLRARNSKFAALLRARSAIFRETHEFFMSRDFIHIDTPKLTRNDCEGG 154

Query: 565 STLF 576
             +F
Sbjct: 155 GEVF 158


>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +1

Query: 400 DVQLDNRHIMIRGENTSKVLRARAAVTRAFREHFASRRYXXXXXXXXXXXXCEGGSTLFK 579
           D +LDNR I +R   +  + R +A +   FR     R +             EGG+ +F+
Sbjct: 207 DTRLDNRVIDLRTPTSHAIFRIQAGICNQFRNILDVRGFVEIMAPKIISAPSEGGANVFE 266

Query: 580 FXYFGG 597
             YF G
Sbjct: 267 VSYFKG 272


>Z93381-6|CAB07609.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 YSAFYM-VYYVRPTML*SYLRSHLWSCM 268
           YS+F + +YY  PT L SY+ +  WSC+
Sbjct: 637 YSSFQLFMYYAVPTTLLSYIFAFFWSCL 664


>Z83218-8|CAB05693.1|  724|Caenorhabditis elegans Hypothetical
           protein C31A11.1 protein.
          Length = 724

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 YSAFYM-VYYVRPTML*SYLRSHLWSCM 268
           YS+F + +YY  PT L SY+ +  WSC+
Sbjct: 637 YSSFQLFMYYAVPTTLLSYIFAFFWSCL 664


>Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical
           protein F28G4.5 protein.
          Length = 720

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 YSAFYM-VYYVRPTML*SYLRSHLWSCM 268
           YS F + +YY  PT L SY+ +  WSC+
Sbjct: 629 YSTFQLFMYYAVPTTLLSYIFAFFWSCL 656


>Z83218-2|CAB05687.1|  705|Caenorhabditis elegans Hypothetical
           protein C31A11.5 protein.
          Length = 705

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 YSAFYM-VYYVRPTML*SYLRSHLWSCM 268
           YS+F + +YY  PT + SY+ +  WSC+
Sbjct: 622 YSSFQIFMYYAVPTTVLSYIFAFFWSCL 649


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +1

Query: 193 CVLHGLLCQTYNALVLSTESSVVLYGKLEAVPEGKKAPGGHELTADYWELIGLAPP 360
           CV  G  C +     +   SS +   K+    +GK A G H L AD  EL    PP
Sbjct: 12  CVFFGFSCLSIFFSGVFDSSSSIACQKVVVARQGKMADGEHTLPADE-ELFEQPPP 66


>Z81529-11|CAB04297.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.13 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -1

Query: 325 LSAHDHPEPSFPRAQPLIFHTRPQMTP*IGLEHCRSDIVNHVERTVGTQCHHAGSGMPEI 146
           ++A  +P P   + +PL  +T    TP   ++  ++   +   RT G  C  +G   P +
Sbjct: 60  VAADGYPSPGRDQQRPLACYTTATATPAAVVQDMKNAAQSTCPRTCGLCCQTSGYNCPNV 119


>Z81529-8|CAB04291.1|  249|Caenorhabditis elegans Hypothetical
           protein F35E8.10 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -1

Query: 325 LSAHDHPEPSFPRAQPLIFHTRPQMTP*IGLEHCRSDIVNHVERTVGTQCHHAGSGMPEI 146
           ++A  +P P   + +PL  +T    TP   ++  ++   +   RT G  C  +G   P +
Sbjct: 60  VAADGYPSPGRDQQRPLACYTTATATPAAVVQDMKNAAQSTCPRTCGLCCQTSGYNCPNV 119


>Z81533-14|CAB04331.2|  707|Caenorhabditis elegans Hypothetical
           protein F36G9.12 protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 101 GYASEDGYIVSGAKVNLWHS*PCVMALGTYSAFYM-VYYVRPTML*SYLRSHLWSCM 268
           G  S   YIV    ++ W++      +  YS F + +YY  P  + +Y+ +  WSC+
Sbjct: 604 GKLSYCAYIVHFFLIS-WYTNISEAPMHYYSTFQVWIYYAVPVTIIAYIFAFFWSCL 659


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 404 TSGKASSLRMASAPPGGA--SPINSQ*SAVSS*PPGAFFPSG 285
           + G       + APP G    P N   +  S  PPG F PSG
Sbjct: 403 SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 444



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 404 TSGKASSLRMASAPPGGA--SPINSQ*SAVSS*PPGAFFPSG 285
           + G       + APP G    P N   +  S  PPG F PSG
Sbjct: 418 SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 459



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 404 TSGKASSLRMASAPPGGA--SPINSQ*SAVSS*PPGAFFPSG 285
           + G       + APP G    P N   +  S  PPG F PSG
Sbjct: 433 SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSG 474



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
 Frame = -3

Query: 404 TSGKASSLRMASAPPGGA--SPINSQ*SAVSS*PPGAFFPSG 285
           + G       + APP G    P N   +  S  PPG F PSG
Sbjct: 448 SGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSG 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,311
Number of Sequences: 27780
Number of extensions: 362456
Number of successful extensions: 875
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)