Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G24
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    28   2.0  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   4.5  
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    26   7.9  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   7.9  

>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 22/78 (28%), Positives = 38/78 (48%)
 Frame = +1

Query: 343 TNYAQRSTPSSKKRLDRKPGARVLSFCSLKRETVLCSRTTELFHFLAKFISCSRKSLQIA 522
           T+Y ++S+ SSKK   +   +   S C  ++  +  S T  L  ++AK+    +    IA
Sbjct: 15  TSYFEKSSKSSKKYGSQNKDSDSSSTCLQQKIEIQWSITDSL--YIAKYGKLKKTKKFIA 72

Query: 523 WPLDLTSSNLRSRLGFAK 576
           + LD T    +S   F+K
Sbjct: 73  FDLDGTLIKTKSGRVFSK 90


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 427 LKRETVLCSRTTELFHFLAKFISCSRKSLQIAWPLDLTS 543
           +KRE++L         +L +F+  S+K   IAW +   S
Sbjct: 348 VKRESLLLDEFESAIQYLNQFLKDSQKIQYIAWDMSAAS 386


>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 563 WVSQRLQYARPHPHAETGYS 622
           W S  +Q+A+PHP  E   S
Sbjct: 186 WASSNMQWAKPHPAYENDRS 205


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 459 YRAISLLSQIYKLFSKVLTNRLASRLNEFQ 548
           Y  IS++S I+   +  L N LAS LN F+
Sbjct: 36  YSIISIISGIFIGLTAALLNALASLLNSFR 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,551
Number of Sequences: 5004
Number of extensions: 76215
Number of successful extensions: 197
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)