Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G24
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 58 1e-08
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 41 0.001
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 40 0.003
11_04_0401 - 17251759-17252208,17252545-17253022,17254235-172542... 34 0.13
07_03_1172 - 24521582-24521714,24522028-24522200,24522459-245226... 33 0.29
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 4.8
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 29 6.3
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 29 6.3
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664 28 8.3
>04_03_0582 + 17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 57.6 bits (133), Expect = 1e-08
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Frame = +3
Query: 342 NQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLTNR 521
+ + + Q PE + ++L KK LK+YR ISL + +YK+ SK L NR
Sbjct: 928 SDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNR 987
Query: 522 LASRLNEFQPPEQAGFRKGYSTLDHIHMLRQV---IQKTEEYNRPLVSRVCGLQKSFDSV 692
L L++ EQ+ F +G D+ + + IQK ++ N + L K++D V
Sbjct: 988 LRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRV 1047
Query: 693 ETWAVLE 713
+ W LE
Sbjct: 1048 D-WRFLE 1053
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/106 (28%), Positives = 46/106 (43%)
Frame = +3
Query: 393 EAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVLTNRLASRLNEFQPPEQAGFR 572
E ++ ++L K G + YR ISL + K+ SKVL RL +Q GF
Sbjct: 966 ERINRAYIVLIQKPGKENTVDGYRPISLQNCSVKILSKVLATRLQRVFLRMIHLDQTGFL 1025
Query: 573 KGYSTLDHIHMLRQVIQKTEEYNRPLVSRVCGLQKSFDSVETWAVL 710
KG +++ ++IQ + K+FDSV W+ L
Sbjct: 1026 KGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSV-IWSSL 1070
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 39.9 bits (89), Expect = 0.003
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +3
Query: 450 LKNYRAISLLSQIYKLFSKVLTNRLASRLNEFQPPEQAGFRKGYSTLDHIHMLRQVIQ-- 623
L +R ISL + +YK+ SKVL NRL L + Q+ F G D + + +
Sbjct: 184 LSKFRPISLCNVLYKIASKVLANRLKLFLPDIVSEFQSAFVPGRLITDSSLVAYECLNTI 243
Query: 624 KTEEYNRPLVSRVCGLQKSFDSVETWAVL 710
K + +P + + K++D +E W+ L
Sbjct: 244 KKQSNKKPFFALKIDMMKAYDRIE-WSYL 271
>11_04_0401 -
17251759-17252208,17252545-17253022,17254235-17254290,
17254489-17255019
Length = 504
Score = 34.3 bits (75), Expect = 0.13
Identities = 18/70 (25%), Positives = 33/70 (47%)
Frame = +3
Query: 333 IVLNQLCTTLNTVIQKTTRPEAWSKGTVILFFKKGDRALLKNYRAISLLSQIYKLFSKVL 512
I+ + + + Q P + ++L LK++R ISL + +YK+ K L
Sbjct: 422 IMKQDIVNPVTKIFQTGLTPMGVNDTAIVLILMSDQPVDLKDFRPISLCNVVYKVVFKCL 481
Query: 513 TNRLASRLNE 542
NRL + L++
Sbjct: 482 VNRLRTVLDD 491
>07_03_1172 -
24521582-24521714,24522028-24522200,24522459-24522677,
24523878-24524114,24524332-24524469
Length = 299
Score = 33.1 bits (72), Expect = 0.29
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 96 IYLIV--IAHGPLTVESYYRSLYASHTPKPFAHP 191
++LI I H P + + YYRSL S++P P A+P
Sbjct: 31 VFLIATPIHHDPRSTKGYYRSLSVSNSPSPCANP 64
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 603 MLRQVIQKTEEYNRPLVSRVCGLQKSFDSVETWAVLEFIQRC---LVDYRYVEVLKSLYK 773
+L+Q+IQ+ V + +ETW + + I RC L + RY VL L++
Sbjct: 301 LLKQLIQRPFLREPRSVDEETSTEDPLKGIETWDICQLINRCRNYLENKRYFIVLHDLWR 360
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 504 KVLTNRLASRLNEF--QPPEQAGFRKGYSTLDHIHMLRQVIQKTEEYNRPL 650
+ L+ L +F +PPE RK YS + + + Q + K++ RPL
Sbjct: 129 RTLSKHLCEVFRKFFTKPPEVDDLRKSYSLIKYFMKMDQTLVKSKILRRPL 179
>02_05_0417 -
28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 28.7 bits (61), Expect = 6.3
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 316 DGISTELFSTNYAQ--RSTPSSKKRLDRKPGARVLSFCSLKRETV 444
D I+ EL + A RS PS L KPG R + FCS KR V
Sbjct: 648 DFINKELIQFSMADLLRSIPSMVDGL--KPGQRKILFCSFKRNLV 690
>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
Length = 582
Score = 28.3 bits (60), Expect = 8.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 299 TELQEMTESVQNCSQPIMHNAQHRH 373
++ QE+ S+Q+ P+ H+ QHRH
Sbjct: 386 SQSQELRLSLQSLPDPMFHHQQHRH 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,677,520
Number of Sequences: 37544
Number of extensions: 477200
Number of successful extensions: 1139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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