Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G21
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    80   4e-16
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          27   2.7  
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    27   4.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   6.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.1  

>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 80.2 bits (189), Expect = 4e-16
 Identities = 36/79 (45%), Positives = 47/79 (59%)
 Frame = +1

Query: 550 LAIGTHDLDTIHGPFIYDALPPNEIKFKALNQPKELTAPELMELYSNHAQLKQYLGIIXE 729
           +AIGTHD   + GPF Y+AL P EI F  LNQ +E+    L+E Y +   L +YL II  
Sbjct: 144 VAIGTHDFSVMEGPFTYEALKPEEINFVPLNQTQEINGSNLLEFYKDSKHLSRYLHIIAN 203

Query: 730 SXXYPIIKDXXGVILSMPP 786
           S  YP+I D    + S+PP
Sbjct: 204 SPRYPVILDAKRRVCSLPP 222



 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 30/51 (58%), Positives = 37/51 (72%)
 Frame = +3

Query: 399 SLHLTMATAQIRPYAVAAVLRGITFTKESYDSFINLQDKLHQNICRKRTLV 551
           SL ++  T++IRPYA AA+LRG+      Y SFI LQDKLH N+CR RTLV
Sbjct: 94  SLTISPETSEIRPYAAAAILRGVKLDPIRYQSFIALQDKLHANLCRNRTLV 144



 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/51 (41%), Positives = 29/51 (56%)
 Frame = +2

Query: 146 KNFXDLCFKFGLELDEVTTEKQMLIKEQGDQADAELSDEILYRIDIPANRY 298
           + F +LCF+FG+ELDE TT          +  +   S+    +IDIPANRY
Sbjct: 22  QEFDELCFQFGIELDEDTT----------NDPERSPSERPSLKIDIPANRY 62



 Score = 33.9 bits (74), Expect = 0.031
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +1

Query: 82  MPTISLKRDALFAALGSTYTDEEFQXPMFQ 171
           MPTIS  ++ L+ ALG  YT +EF    FQ
Sbjct: 1   MPTISCDKEELYKALGREYTTQEFDELCFQ 30


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 476 CKSNASKYSCYSIGSYLCC 420
           C+ NASKY C    S  CC
Sbjct: 12  CQKNASKYRCPRCDSRFCC 30


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 110 RFSPHSVLHTLMKN--FXDLCFKFGLELDEVTTEKQMLIKEQGDQADAE 250
           +F P   LHT   N    DLC K G+E     T  ++L K  G+  ++E
Sbjct: 411 KFPPGDQLHTPEANAFLRDLCAKHGVECAPPQTCSRLLDKLVGEFIESE 459


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 609 QCIIDEWTMYSVQIMCSYSQLKSFSC 532
           Q  + EW  Y +  +C+ SQ   F+C
Sbjct: 658 QVAVQEWMNYHIPGICTTSQSNGFTC 683


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = -2

Query: 426  VLWPSLGVKSYSLHIFSLCTEVEVSXPWNTNRPSTSPSRHNKSYLLAGMSIL*RISSDNS 247
            V  PS   +S+S   FS    ++ S  +N+   ST+      S L +  +I    ++ + 
Sbjct: 3566 VFVPSSVSRSFSYSRFS-SGSLDSSSVFNSTTVSTASGISQGSVLSSTRAIESESTASHR 3624

Query: 246  ASAWSPCSLINICFSVVTSSSSKPN 172
            +S  S  S  ++  S  +SSSS+P+
Sbjct: 3625 SSVLSELSSYDLSTSAFSSSSSEPS 3649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,353
Number of Sequences: 5004
Number of extensions: 61203
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)