Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G20
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    29   1.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.6  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    27   2.6  
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    26   5.9  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   7.8  

>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
 Frame = +3

Query: 318 ASRNEDLSPLHWRVLASNTGSIR--NNWTVGSNI-GQKNTHSLKGRSS 452
           AS +E+L+P   + LASNT  ++  N+ +  S+I G + T++L G+S+
Sbjct: 196 ASTSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKST 243


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 374 GFNSKQLDSWLKYWAEEYPFA-ERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVP 550
           G  S+QL S++  +A       E +K  N Y +FK N+  L+++  ++  +V  D     
Sbjct: 366 GIVSRQLLSFIAPFAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSPDAPFTK 425

Query: 551 L 553
           L
Sbjct: 426 L 426


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 395 DSWLKYWAEEYPFAERQKFLNQY 463
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 467 HFKTNIQGLNIHFMRITPKVPKDVEIVPLLLLHGWPGSVREFYEAIPHLTAVSKDR-NFA 643
           H+KTN+ G  IH  +    + K  E   ++      GS+  F+         SK   NF 
Sbjct: 110 HYKTNVLG-PIHVYQAFYPLVKKGESKIIVFTSSLVGSMGAFFPFNQSGYGQSKAALNFT 168

Query: 644 LEIIAPSLPGYGFSDXAVRPGLAAAEXA 727
           ++ I+  L   GF   ++ PG+   + A
Sbjct: 169 MKEISFELQDEGFIVISIHPGMVRTDSA 196


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 357 PSNGGAKGLRFLMRSLSSFTIVSLKVISKGLMLVS 253
           PSN   +G+R L+ +L +   ++ K + KGLM ++
Sbjct: 273 PSNPELEGVRELLSTLDAKKSLTDKALEKGLMAIT 307


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 499 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 392
           N+QTLD+SL    L+K+   + +++  +    EPT+Q
Sbjct: 98  NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,288
Number of Sequences: 5004
Number of extensions: 71091
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)