Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G18
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.85 
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p...    27   3.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   3.4  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   3.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 670 SGCGRCRVWSMXVRYVRFXELXFYIMRXSKLYIF 771
           +GCG+  VW   VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 118 TRNPSPRQSSRASLEYLLLPPRSAPTEAPSGL 23
           ++NP  R +SR+       PP+SAP++  S +
Sbjct: 191 SKNPQNRSNSRSKQRNKNAPPKSAPSKRKSNI 222


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 23/80 (28%), Positives = 34/80 (42%)
 Frame = -2

Query: 541 CGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPYLPSIGXPWNSNAQAEKKTL 362
           CGY  E A          FS   E  R  P M  +S +   LPS    +   +  +++ L
Sbjct: 28  CGYDVESAAEFI------FSGQLEKSRLVPIMSSTSIASS-LPSYQDTFFLPSPRKRRRL 80

Query: 361 PGPLGGVFRPLWVTPSNTRF 302
           PG +G V +P  + P+   F
Sbjct: 81  PGRIGTVLKPSALFPAIAPF 100


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 540 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 412
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,869
Number of Sequences: 5004
Number of extensions: 70076
Number of successful extensions: 210
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)