Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G18
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0098 + 25560158-25560925 32 0.68
06_01_0350 + 2534422-2535615 31 0.90
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 31 1.6
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 30 2.1
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 3.6
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 6.3
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 6.3
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 28 8.4
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 28 8.4
01_01_0070 - 542603-542686,542803-543441 28 8.4
>05_06_0098 + 25560158-25560925
Length = 255
Score = 31.9 bits (69), Expect = 0.68
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = -1
Query: 686 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 507
HRP P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_01_0350 + 2534422-2535615
Length = 397
Score = 31.5 bits (68), Expect = 0.90
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 418 LPSIGXPWNSNAQAEKKTLPGPLGGVFRP 332
L ++ PW S+A+ E+K LP PL +F P
Sbjct: 36 LRAVCRPWRSSARLERKLLPPPLPWLFLP 64
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 538 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPSIGXPWNS 389
G+ P+ H P P+ S R PP R S RSE P + P+ +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPLDSPFQA 76
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 30.3 bits (65), Expect = 2.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 689 RHRPHPLPVQTRHAPVLRANP 627
+++ H +PVQ H+PVL+ NP
Sbjct: 336 KNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 677 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 588
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 671 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 558
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 683 RPHPLPVQTRHAPVLRANPYSEVTDP 606
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 493 PEFSRSAESIRTPPQMRCSSRSEPYLPSIGXPWNSNAQAEK 371
P S A I TPP R +S + PS G P NS+++ ++
Sbjct: 140 PRRSPDAAPILTPPITRPTSLESYHQPSYGMPVNSSSRFDE 180
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 585 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 460
+ +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 28 HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 61 PPRSAPTEAPSGLTPKTLP 5
PP +AP EAP+ L P T P
Sbjct: 127 PPVAAPAEAPAALPPATTP 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,539,437
Number of Sequences: 37544
Number of extensions: 542376
Number of successful extensions: 1876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1876
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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