Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G17
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.89 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   1.2  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   1.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    24   1.6  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           23   4.7  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.3  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   6.3  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 537 CGCRTCCAANKRCWCSGTFWKAPRGWRIRCRIPP*TTAAAC 415
           C C+TC +  K C+        P   + + R+PP T    C
Sbjct: 435 CECKTCNSKTKCCFAQDD-GLCPYTLKHKIRVPPGTPIYEC 474


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 459 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 560
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFADIKEKCDRRNGKTTEEN 390


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 459 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 560
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 354 SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 390


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 459 SNLWVPSKKCHYTNIACL---LHNKYDSRKSKTYVAN 560
           SN + P   CH  +IAC    +  K D R  KT   N
Sbjct: 65  SNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEEN 101


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +3

Query: 180 RLLKTTMGKISLFFLALIASSVMALYRVPLHRMKTA 287
           R+++  +GK+ +  +    + V++LY  P+   + A
Sbjct: 76  RVIRAKLGKVGVHCMKTTQAVVVSLYEDPIQPQQAA 111


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 576 IQYGSGSLSGFLSTDDVTVGGLKG 647
           I Y  G L GFLST+D  V G  G
Sbjct: 156 INYRLGIL-GFLSTEDEVVPGNMG 178


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 576 IQYGSGSLSGFLSTDDVTVGGLKG 647
           I Y  G L GFLST+D  V G  G
Sbjct: 27  INYRLGIL-GFLSTEDEVVPGNMG 49


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +3

Query: 576 IQYGSGSLSGFLSTDDVTVGGLKG 647
           I Y  G L GFLST+D  V G  G
Sbjct: 156 INYRLGIL-GFLSTEDEVVPGNMG 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,265
Number of Sequences: 438
Number of extensions: 5153
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)