Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G15
(958 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 30 0.55
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.7
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 28 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 5.2
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 9.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 9.0
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -3
Query: 224 DKILL*NKQYFTSIVQALATLALLFSCN 141
+KILL N+ F S+V+ TLA+L CN
Sbjct: 105 EKILLWNQLKFMSLVRMFTTLAVLAQCN 132
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/75 (28%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Frame = +1
Query: 652 PPRXXXLRXXXPXA-GSRXAPXPPPXPPASXXXTCRVXXAPXGXXXTXXPSAXXXPXXGP 828
PP R P GS + PPP PP + P G P P G
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 829 XXP--SPSXXXXXPP 867
P S S PP
Sbjct: 375 QPPPLSSSRAVSNPP 389
Score = 27.1 bits (57), Expect = 3.9
Identities = 21/77 (27%), Positives = 22/77 (28%)
Frame = +1
Query: 697 SRXAPXPPPXPPASXXXTCRVXXAPXGXXXTXXPSAXXXPXXGPXXPSPSXXXXXPPXXX 876
S AP PPP PP S +P P P S S PP
Sbjct: 247 SLSAPAPPPIPPPSNGTVSSPPNSP--------PRPIAPVSMNPAINSTSKPPLPPPSSR 298
Query: 877 XRXXTXRAXXPXPPPXP 927
A PPP P
Sbjct: 299 VSAAALAANKKRPPPPP 315
Score = 26.2 bits (55), Expect = 6.8
Identities = 28/95 (29%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Frame = +1
Query: 652 PPRXXXL--RXXXPXAGSRXAPXPPPXPPASXXXTCRVXXAPXG-XXXTXXPSAXXXPXX 822
PPR R P + SR A PP PP + P G T P P
Sbjct: 365 PPRSAPSTGRQPPPLSSSR-AVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 823 GPXXPSPSXXXXXPPXXXXRXXTXRAXXPXPPPXP 927
P P PS PP A P PP P
Sbjct: 424 PPSAP-PSLPPSAPPSLPMGAP---AAPPLPPSAP 454
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/65 (33%), Positives = 23/65 (35%)
Frame = -2
Query: 846 GGGGXXXXXRGXXXGGGXXRXRXXRXXGXDAAGGXXGGGXXGGWXGGXPRXGXGXGXAKX 667
GG G RG GG R G A GG GG G G R G G
Sbjct: 9 GGRGGSRGGRGGFNGG---RGGFGGGRGG-ARGGGRGGARGGRGGRGGARGGRGGSSGGR 64
Query: 666 XGARG 652
GA+G
Sbjct: 65 GGAKG 69
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +3
Query: 804 PSXPXAGXXXPLPLPXXXPPXAXXLXXXXXPRXXPPAXAXSSPP 935
P P P P P PP A + P PP A + PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-PPPPGVAGAGPP 776
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 5.2
Identities = 18/54 (33%), Positives = 19/54 (35%)
Frame = +3
Query: 795 PLRPSXPXAGXXXPLPLPXXXPPXAXXLXXXXXPRXXPPAXAXSSPPXLXXDPS 956
P RPS P P+P PP L P PA SPP PS
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSL-----PPPAQPAAPVKSPPSAPSLPS 192
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 25.8 bits (54), Expect = 9.0
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = -2
Query: 819 RGXXXGGGXXRXRXXRXXGXDAAGGXXGGGXXGGWXGGXPRXGXGXGXAKXXGARG 652
+G G R G + G GG GG+ GG R G G G G+RG
Sbjct: 128 KGARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGF-GGGSRGGFGGG--SRGGSRG 180
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 9.0
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = -3
Query: 395 FSSFAPSMNTMSAVSISSDSLCKSRSNPGRPALSTEAAQHVPGTLFAMDTKFHTILRDKI 216
FSS + S + + SISS S S P +L ++ + G+ + + TI
Sbjct: 603 FSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSS 662
Query: 215 LL*NKQYFTSIVQALATL 162
L Y +S++ + +TL
Sbjct: 663 L---STYSSSVIPSSSTL 677
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,804,246
Number of Sequences: 5004
Number of extensions: 52647
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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