Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G13
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    27   3.4  
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac...    27   4.5  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    26   7.8  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   7.8  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 251 EPYTRARAELSWLSLGTTRASTAEVTWRGERCTTS 355
           EPY + ++++S +++ T  ASTA++  R +   T+
Sbjct: 389 EPYLKDQSKISEIAVKTAMASTADILSRSKGSATA 423


>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
           Vps23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 487

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 609 LLNTAMSSLKDSEEHTXPPATPGSRGVQVASSHFSKIRA 493
           L+NT +  LK  EE+  PP  P       +  HF K+ A
Sbjct: 150 LVNT-IEKLKVKEENEAPPVIPAKPFSSSSEQHFRKVPA 187


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = -1

Query: 609 LLNTAMSSLKDSE----EHTXPPATPGSRGVQVASSHFSKIRASRGXQGMPVNSVFVSLV 442
           +LNT  +  K++E    ++   P T  S    + SS  S++  +R   G  V ++  SL+
Sbjct: 322 VLNTLYAVTKNAEGWSKQYGSSPVTVDSAAANIVSSGISRVILTRVGNGPRVLTIDESLI 381

Query: 441 D 439
           D
Sbjct: 382 D 382


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 120 RVHYDTSELAGRCDSVRSYMCMCARACVVS*VGPVTEI 233
           ++   TS      D+V+ Y+C+     VVS V PV EI
Sbjct: 431 KIRSPTSTPTPLIDAVKQYICLALAKNVVSHVLPVFEI 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,486
Number of Sequences: 5004
Number of extensions: 57528
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)