Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G13
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1032 - 30259180-30260519,30260650-30260720,30261099-302621... 32 0.67
03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248 32 0.67
12_01_0648 + 5496696-5497052 25 0.78
03_02_0922 - 12417328-12417816,12417929-12418399,12418568-124186... 31 0.88
07_03_0793 + 21552499-21552729 30 2.0
02_05_0059 - 25482207-25482271,25482432-25482651 30 2.0
01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962 30 2.0
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 30 2.7
04_04_0673 - 27168305-27168874,27168977-27169099,27169180-271694... 30 2.7
12_02_1261 + 27410921-27413401 29 3.6
11_06_0257 + 21746643-21748091 29 3.6
04_01_0167 + 1864956-1865495 29 3.6
10_04_0012 + 7555067-7555867 29 4.7
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 29 6.2
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 6.2
08_02_0386 - 16575636-16575698,16575799-16575858,16575947-165762... 29 6.2
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 29 6.2
06_03_0336 + 19671500-19672150,19672681-19673301 29 6.2
04_03_0801 - 19828175-19828770,19828913-19828994 29 6.2
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 29 6.2
12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534 28 8.2
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 28 8.2
02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022 28 8.2
>04_04_1032 -
30259180-30260519,30260650-30260720,30261099-30262118,
30263886-30264121
Length = 888
Score = 31.9 bits (69), Expect = 0.67
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 185 VCTCLCGVLGWARDRNRSWWP 247
+ C G++ W R RN SWWP
Sbjct: 26 ITDCSPGIIVWVRRRNGSWWP 46
>03_06_0419 - 33789625-33789843,33790884-33791185,33791279-33792248
Length = 496
Score = 31.9 bits (69), Expect = 0.67
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -1
Query: 381 SQVGMGQPVLV-VHRSPLHVTSAVEALVVPRLSHESSARARV*GSAGHHERFRSRAQPK 208
+ VG G P+ VH SPL TS VVP + A+ R +A R R +P+
Sbjct: 129 AMVGSGHPMAAPVHSSPLATTSGSNHAVVPDAPPQEPAKRRRRNTAAAATARRGRGRPR 187
>12_01_0648 + 5496696-5497052
Length = 118
Score = 25.4 bits (53), Expect(2) = 0.78
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 397 GGSALEPGGDGSACARGTS 341
GGSA PGG+ SA G S
Sbjct: 70 GGSASAPGGNSSALGSGAS 88
Score = 25.0 bits (52), Expect(2) = 0.78
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 442 GLVVPRGGRERVLPAGGSALEPGG 371
G P G LP GG A+ PGG
Sbjct: 6 GDAAPPGSGMAALPGGGEAVLPGG 29
>03_02_0922 -
12417328-12417816,12417929-12418399,12418568-12418663,
12418746-12418927,12419027-12419486
Length = 565
Score = 31.5 bits (68), Expect = 0.88
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 537 RGVQVASSHFSKIRASRGXQGMPVNSVFVSLVD*WFPG-EGVSGCCRRGVVHWSQVGMGQ 361
RG +V S +R RG P ++ D W G SGCCR G++H + M
Sbjct: 80 RGEKVVESEGGHVRVVRGRPWPPA-----AVPDPWQRGWSAASGCCREGLMHIGFITMEP 134
Query: 360 PVLVV 346
L V
Sbjct: 135 KTLFV 139
>07_03_0793 + 21552499-21552729
Length = 76
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 427 RGGRERVLPAGGSALEPGGDGSACARGTSL 338
+GG +RV +GG ++ GGD + ARG +
Sbjct: 22 QGGGQRVNRSGGGSMRRGGDNGSLARGDDI 51
>02_05_0059 - 25482207-25482271,25482432-25482651
Length = 94
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 427 RGGRERVLPAGGSALEPGGDGSACARG 347
RGG ++V GG +++ GGD + ARG
Sbjct: 22 RGGGQQVNDGGGGSMKGGGDSGSLARG 48
>01_05_0339 + 21135250-21135467,21136465-21137513,21137905-21138962
Length = 774
Score = 30.3 bits (65), Expect = 2.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 203 GVLGWARDRNRSWWPAE 253
G L W R RN SWWP +
Sbjct: 25 GALVWVRRRNGSWWPGQ 41
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 29.9 bits (64), Expect = 2.7
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -3
Query: 559 SARHARVPGGTGR*LTLFEDQSQQGEXGDARK*R-LCLSCGLVVPRGGRER 410
S R A+ GG+GR T D ++ G R R L + C + RGG ER
Sbjct: 64 SERKAKQVGGSGRAATGERDNGRKAVTGGGRSGRGLVVCCQMAPRRGGGER 114
>04_04_0673 -
27168305-27168874,27168977-27169099,27169180-27169440,
27169723-27169970,27170403-27170483,27171530-27171902
Length = 551
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = -3
Query: 442 GLVVPRGGRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRR 314
GL+ PR G LP E G G A A S P C RR
Sbjct: 153 GLLPPRNGLHVPLPGQAQEQETAGGGGAGAGTGSALPECRCRR 195
>12_02_1261 + 27410921-27413401
Length = 826
Score = 29.5 bits (63), Expect = 3.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +2
Query: 191 TCLCGVLGWARDRNRSWWPA 250
T G L WA+ + R WWPA
Sbjct: 9 TLAAGDLVWAKSKRRPWWPA 28
>11_06_0257 + 21746643-21748091
Length = 482
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Frame = -3
Query: 409 VLPAGGSALEPGGDGSACARGTSLPPPCNL---RRGGSRRT*AEP*KLGPSPGVGLRW 245
VL G A GGD +AC P C L R G R T + P G GLRW
Sbjct: 189 VLSCGPHAAAGGGDAAACVVLLLHMPRCELSYARPGDERWT-----WISPGAGTGLRW 241
>04_01_0167 + 1864956-1865495
Length = 179
Score = 29.5 bits (63), Expect = 3.6
Identities = 21/64 (32%), Positives = 27/64 (42%)
Frame = -3
Query: 448 SCGLVVPRGGRERVLPAGGSALEPGGDGSACARGTSLPPPCNLRRGGSRRT*AEP*KLGP 269
+C + G V A +A P +A R T LPP RR G R + A P P
Sbjct: 20 ACSVTAAMPGARAVYSAPVAAGGPPSSHAASLRST-LPPCSTPRRAGQRSSTAAPRHHRP 78
Query: 268 SPGV 257
SP +
Sbjct: 79 SPAL 82
>10_04_0012 + 7555067-7555867
Length = 266
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 394 GSALEPGGDGSACARGTSLPPPCNLRRGGSR 302
GS +P GD +GTS PC LR+G R
Sbjct: 8 GSCRKPCGDQGRQQQGTSFLHPCPLRQGEGR 38
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 203 GVLGWARDRNRSW-WPAEPYTRARAELSWLSLGT 301
GVLGW +NRS WP +RAR L L LG+
Sbjct: 58 GVLGWGEIKNRSCPWPVVRLSRAR--LVTLCLGS 89
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 209 LGWARDRNRSWWPAEPYTRARAELSWLSLGTTRASTAEVTW 331
L W + R+ WWP + + A A S L+L TRA V +
Sbjct: 119 LVWGKVRSHPWWPGQVFDAADA--SKLALKHTRAGAPLVAY 157
>08_02_0386 -
16575636-16575698,16575799-16575858,16575947-16576239,
16576361-16576517,16576601-16576948,16577047-16577177,
16577417-16577882,16578425-16579132
Length = 741
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -2
Query: 338 PPSM*PPPWRLSSYLG*AMKARPEPGCRAPLATTNDFGHGP 216
PPS PPPW ++ + P+P AP A G P
Sbjct: 15 PPSPTPPPWLHGPHVPSTSVSPPDPATEAPPAPKQHRGPRP 55
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 411 RSRPPRGTTSPQERQRRYLRASPXSP 488
+SR RG+ P + QRRY R SP P
Sbjct: 617 QSRQLRGSRLPHQSQRRYGRRSPRRP 642
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 28.7 bits (61), Expect = 6.2
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = -3
Query: 448 SCGLVVPRGGRERVLPAGGSALEPGGDG 365
+CGL+ P G VLPA A EPGG G
Sbjct: 328 ACGLMAPGAGGIGVLPA--FAYEPGGGG 353
>04_03_0801 - 19828175-19828770,19828913-19828994
Length = 225
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 400 AGGSALEPGGDGSACARGTSLPPPC 326
+GG E GG G C + PPPC
Sbjct: 173 SGGHGGECGGGGGGCKKPCCSPPPC 197
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 28.7 bits (61), Expect = 6.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 203 GVLGWARDRNRSWWP 247
G + W R RN SWWP
Sbjct: 25 GTIVWVRRRNGSWWP 39
>12_02_0121 + 13919496-13919734,13919821-13919982,13920102-13920534
Length = 277
Score = 28.3 bits (60), Expect = 8.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -3
Query: 442 GLVVPRGGRERVLPAGGSALEPGGDG 365
G V+P GR VLP G A+ PGG+G
Sbjct: 251 GEVMP--GRGEVLPGRGKAILPGGEG 274
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 517 LTLFEDQSQQGEXGDARK*RLCLSCGLVVPRGGRERVLPAGG 392
+T FED ++ E G RK L L +P G +R L GG
Sbjct: 6 VTTFEDSEKESEYGYVRKVPSPLIVFLPLPHVGLDRSLSCGG 47
>02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022
Length = 458
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 294 RLSHESSARARV*GSAGHHERFRSRAQPKTPHKH 193
RL H+ V +A HH RS A+ + H+H
Sbjct: 378 RLQHDGDGDDDVAAAAAHHHLMRSLARQQQQHRH 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,715,353
Number of Sequences: 37544
Number of extensions: 607255
Number of successful extensions: 2345
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2339
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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