Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G10
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.087
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.26
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 2.5
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 3.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 5.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 5.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 5.7
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 25 10.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 10.0
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 10.0
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 10.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 25 10.0
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 10.0
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.087
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 504 SWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSLYVKFSTLST*WVKYSSWTSF 683
SW T P TS S+V S +++ T TFT S S+ S+ +T ++S +S
Sbjct: 618 SWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSSSSTATSSTSFASESSS 677
Query: 684 WTEN 695
+ N
Sbjct: 678 FYSN 681
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.26
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -3
Query: 389 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 231
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 230 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 69
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 2.5
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -3
Query: 302 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 123
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 122 SSLR 111
+SLR
Sbjct: 200 ASLR 203
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -2
Query: 309 RDGESRVYPAVR-VHNGERDFINDAVN 232
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 509 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 622
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 718 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 539
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 538 LVFNDGTVKIQDQHLDAASF 479
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 718 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 539
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 538 LVFNDGTVKIQDQHLDAASF 479
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 5.7
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = -1
Query: 718 PRHCHKLKFSVQKEVHEEYLTHYVDKVENFTYKESESVKVLSVQVRVEIVDK*LFTTRLA 539
P H ++ EV E ++ Y+D + + ESE VK + V ++ + L +
Sbjct: 542 PAHFQYFINTILGEVKESHVVCYMDNILIHSKSESEHVKHVK-DVLQKLKNANLIINQAK 600
Query: 538 LVFNDGTVKIQDQHLDAASF 479
F+ VK H+ F
Sbjct: 601 CEFHQSQVKFIGYHISEKGF 620
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 10.0
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 15 PDTRT*RTSVLTTATDAPRARHV*RFR--LRKGASQARLCVH 134
PD +T T +L P RH+ RF+ ++ + RLC++
Sbjct: 125 PDAKTNWTPILPKLPCGPTQRHIYRFKEIPQQNFTHVRLCMY 166
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 10.0
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +1
Query: 322 GRVGKDY---VQPGVGPHVEGQD-EVKYHKYYQRVCFVLFFQAILFY 450
G+ GK Y V G V+ +D + KY KY C + +A LF+
Sbjct: 1023 GKDGKPYSGWVDTKTGEPVDDKDVKAKYEKYILEHCGIRIIEAELFH 1069
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 644 INVVGQIFFMDFFLDGE 694
++ GQ F++DF LDG+
Sbjct: 372 VHTSGQFFYLDFLLDGK 388
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 10.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 279 VRVHNGERDFINDAVNRVTDVL 214
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +2
Query: 626 CEVLNFINVVGQIFFMDFFLDGEFQLMAVTWSASQ--KWSPR 745
CEV F G + FF+D +L A +AS+ KW+ R
Sbjct: 225 CEVAEFAEQWGFMKVSSFFMDSIHELKAFLENASKDGKWNNR 266
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 10.0
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 464 LWKTWEGGRIKMLVLDLNCPIVEDECKSGRKKLLVDYFHTNLHTQNF 604
+W G +K LV +N P+ + RK LLV ++ + ++
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLNSQIRLWDY 252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,478,239
Number of Sequences: 5004
Number of extensions: 74024
Number of successful extensions: 254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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