Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_G06
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 49 9e-07
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 37 0.004
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 29 0.62
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 3.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 3.3
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 3.3
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 27 4.4
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 5.8
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 5.8
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 26 7.6
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 48.8 bits (111), Expect = 9e-07
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +3
Query: 150 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 317
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 318 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 479
S+++SEL A + P + +++Q + A++ + D L ++T+L
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYL 150
Score = 36.3 bits (80), Expect = 0.005
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = +1
Query: 478 LVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCA 657
LV R+TLAD+ L +VL S + ++ R++ T+ HQ ++ A+ L
Sbjct: 150 LVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFID 209
Query: 658 APPTYDPKKHQELAGAQ 708
P +++E A A+
Sbjct: 210 QPLPIIKAENKEAAPAK 226
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 478 LVTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 624
LV +R TLAD+ S L F ++D R L ++ R+++T+ HQ ++
Sbjct: 155 LVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203
Score = 35.5 bits (78), Expect = 0.009
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)
Frame = +3
Query: 30 MAAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFES 209
M G LY++ N R L A+ V + + S D KFP K+P F
Sbjct: 1 MFLGTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIG 57
Query: 210 ADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQWASWSDSELL-PASC-AWV 365
ADG L + Y+ E L + +A + +W + + +++ P + WV
Sbjct: 58 ADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKWMCFINFDIVTPQNVRPWV 117
Query: 366 FPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFL 479
+ G + + ++ + + + + +LK+ + + RT+L
Sbjct: 118 GMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYL 155
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.5 bits (63), Expect = 0.62
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 493 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTL 651
I++AD+ V++ + H++ L L NV RWF + HQ V S+++
Sbjct: 144 ISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSM 195
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 551 STCWKACSSVLKTMTSASVILSVTKEGACEKMSVQYF 441
ST W A ++ ++ + + I + AC++ S+QYF
Sbjct: 317 STAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYF 353
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 57 PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 236
P F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611
Query: 237 SN 242
SN
Sbjct: 612 SN 613
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = +1
Query: 286 IWLPKPVSGSGHHGLTANYCL-LPALGSSLTLV 381
+W+P PV SG T C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 424 TYWPP*KYWTDIFSHAPSLVT 486
TY PP Y D+FS APS+ +
Sbjct: 257 TYLPPFNYDHDVFSFAPSVAS 277
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 226 STFPSALSNAGTFPAGNFFKKSSDL 152
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 237 SNAIAYYVANESLRGGDLATQARVWQWAS 323
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +1
Query: 316 GHHGLTANYCLLPALGSSLTLV--SCNSTN-RMLNVQSL 423
GH L + C P++GSS L+ +C N R+ V++L
Sbjct: 213 GHTDLIRDICWAPSMGSSYYLIATACKDGNVRIFKVETL 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,280
Number of Sequences: 5004
Number of extensions: 69999
Number of successful extensions: 221
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -