Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G04
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    32   0.58 
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    32   0.58 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical p...    30   2.3  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   3.1  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical pr...    28   9.4  
DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determini...    28   9.4  

>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +2

Query: 359 YPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLP---SRKEGALPSYMSQ 529
           YP+  +I YP  ++  +P P  QT P P+        +R +T+P     +   +P  +  
Sbjct: 315 YPMISEIRYP-DLNTMRPEPTAQTPPAPAAPPAAPALNRQSTIPPVAMTQRPMIPPSLPS 373

Query: 530 STDPSP 547
           ST P+P
Sbjct: 374 STPPAP 379


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 325 SRSLPRRKAHPLPGRKENPLPRESARSPTLPRLSNMSLTQLKR 453
           S S PRR+    P ++    PR + RSP+ PR   +S + ++R
Sbjct: 88  SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRRRISRSPVRR 130


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           P PV   +P PV V +P P P     P+P
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVP 40



 Score = 29.9 bits (64), Expect = 2.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 353 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDC 457
           +P PV + +P P+ + +P P P     P+P   +C
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNC 49



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 356 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           P P+    P PV   VPQP P     P+P
Sbjct: 4   PIPIPIPAPVPVPAPVPQPVPVPMPMPMP 32



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 353 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           IP PV    P P  V VP P P     P+P
Sbjct: 9   IPAPVPVPAPVPQPVPVPMPMPMPMPMPMP 38



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 353 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           IP P+   +P P  V  P P P     P+P
Sbjct: 5   IPIPIPAPVPVPAPVPQPVPVPMPMPMPMP 34



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 353 IPYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           IP P    +P PV   VP P P     P+P
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMP 36


>Z95559-13|CAB09003.2|  682|Caenorhabditis elegans Hypothetical
           protein Y41E3.1a protein.
          Length = 682

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
 Frame = +1

Query: 325 SRSLPRRKAHPLPGRKENPLPRESARSPTLP---RLSNMSLTQLKRLSRYQFTYRNPTQS 495
           S SLP++  +   GRK     RE+A   T P     S M +  L  L   +        S
Sbjct: 447 SISLPKQLRNTEKGRKMEQNLRENAEKLTSPFDIHASLMDILNLSELGENELNRMQDASS 506

Query: 496 KRRCLTQLHVPVDR 537
           KR       +PVDR
Sbjct: 507 KRSLSVFKPIPVDR 520


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 353 IPYPVEKKIPYPVKVHVPQPYP 418
           +P PV  ++P P++V VP P P
Sbjct: 156 VPVPVPVQVPVPIRVPVPVPVP 177



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 21/64 (32%), Positives = 26/64 (40%)
 Frame = +2

Query: 356 PYPVEKKIPYPVKVHVPQPYPXCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSYMSQST 535
           P PV + +P PV V VP P       P+P+    Q T    A  P     A P Y   + 
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPVPVPT-PVYQPT--YCAVPPCPAPAATPVYAQPAP 205

Query: 536 DPSP 547
            P P
Sbjct: 206 RPMP 209


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 356 PYPVEKKIPYPVKVHVPQPYPXCQTCPLP 442
           P P  K +P P+  H P+P+P     P P
Sbjct: 210 PMPFPKPMPKPMPKHKPKPFPKPMLFPKP 238


>U39850-2|AAA81056.1|  451|Caenorhabditis elegans Hypothetical
           protein F52C9.7 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 340 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 504
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R+ +  + R
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211


>DQ641631-1|ABG29106.1|  451|Caenorhabditis elegans sex determining
           protein MOG-3 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 340 RRKAHPLPGRKENPL--PRESARSP--TLPRLSNMSLTQLKRLSRYQFTYRNPTQSKRR 504
           +R+  P P R+  P   PR+ +RSP    PR    S  + ++LSR   + R+ +  + R
Sbjct: 153 KRRRSPSPKRRRRPSEKPRKRSRSPRRERPRSPKRSREESRKLSRKPSSSRSKSPRRSR 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,116,089
Number of Sequences: 27780
Number of extensions: 241188
Number of successful extensions: 833
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)