Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_G02
         (826 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.    29   3.1  
Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>AF007861-1|AAB66721.1|  147|Caenorhabditis elegans ce-Mago protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 178 LKYNHGSNYRNDTNAKSDDTIRTKSIMDEAR 86
           L+Y + SNY+NDT  + + T+ ++S++ E +
Sbjct: 33  LRYGNNSNYKNDTMIRKEATV-SESVLSELK 62


>Z81108-3|CAB03239.1|  152|Caenorhabditis elegans Hypothetical
           protein R09B3.5 protein.
          Length = 152

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/31 (35%), Positives = 22/31 (70%)
 Frame = -1

Query: 178 LKYNHGSNYRNDTNAKSDDTIRTKSIMDEAR 86
           L+Y + SNY+NDT  + + T+ ++S++ E +
Sbjct: 38  LRYANNSNYKNDTMIRKEATV-SESVLSELK 67


>Z81117-5|CAB03321.1|  279|Caenorhabditis elegans Hypothetical
           protein T06E6.11 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 32  LVMRASLFIRSRLPD*RGTRLIHYRFSSDCIIRLCVCVVSIIGTVIIFQVAPSAHICSVS 211
           L +  S+F+   +   +   LI++R + D +   C C  SI G  I  Q+     I ++S
Sbjct: 24  LFLLYSMFVTKIVSKKQDLSLIYFRLAIDMVYSFCAC--SIQGYYICRQINDELVIKNLS 81

Query: 212 F--DWHITSCLIL 244
           F   W    C+ +
Sbjct: 82  FFLTWPTNVCITI 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,881
Number of Sequences: 27780
Number of extensions: 310555
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)