Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F24
(926 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.70
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 2.8
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 3.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.8
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 27 5.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 5.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 6.6
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 26 8.7
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 8.7
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 8.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.70
Identities = 32/120 (26%), Positives = 48/120 (40%)
Frame = +1
Query: 310 SPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*GSRP 489
S P P + P T R+ S +RA+S + P + GR A+ G SR
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLS----SSRAVSNPPAPPPAIPGRSAPALPPLGN--ASRT 412
Query: 490 RSRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTLPRGETRAIP 669
+ +P+ S ++ +LP + + + A PLP AP LP G A P
Sbjct: 413 STPPVPTPP----SLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Score = 27.5 bits (58), Expect = 2.8
Identities = 37/137 (27%), Positives = 50/137 (36%), Gaps = 2/137 (1%)
Frame = +1
Query: 301 IPTSPRPSPSXKGVPXTLRRRQTRSIPS*EARALSRQGSRAPTLRGRQTRAISREGVR*G 480
+P P P S L + + P R+ G + P L +RA+S
Sbjct: 336 LPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSS--SRAVSNPPAPPP 393
Query: 481 SRPRSRAIPSRKEGALSRTRTS*QALPRQ--GARAPALPSREARPLPRQGSSAPTLPRGE 654
+ P A G SRT T P + P+LP LP +AP LP
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 655 TRAIPRRS*VPYAAYPL 705
A P + +P AA PL
Sbjct: 454 PIAPPLPAGMP-AAPPL 469
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +1
Query: 478 GSRPR--SRAIPSRKEGALSRTRTS*QALPRQGARAPALPSREARPLPRQGSSAPTL 642
GS PR S A+ ++ S ++ S + P Q + PALPSR LP + S P++
Sbjct: 77 GSTPRTASPAVGNQDYSKPSYSQPS-YSQPSQPPKEPALPSRGTPSLPSRPGSRPSV 132
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.5 bits (58), Expect = 2.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 571 ARAPALPSREARPLPRQGSSAPTLPRGETRAIP 669
A + A+P EA+P P S+A P E+ +P
Sbjct: 316 ATSDAVPPAEAKPEPVPASAAERAPTSESTTVP 348
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 487 PRSR-AIPSRKEGALSRTRTS*QALPRQGARAPALPSR-EARPLPR--QGSSAP 636
PR R A P + A +R+ ++ ALP + P PSR + P P QG S+P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGGSSP 55
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 401 YPVKVAVPQPYEVVKHVPYHVKEYVKV 481
Y +K+ VP P+ ++H P HV Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 130 QLCFLSSSSHWQPLLLPAGKLSRA 59
++ L WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 481 SRPRSRAIPSRKEGALSRTRTS*QALPRQGARAPA--LPSREARPLPRQGSSAPTLPRGE 654
S P S+ + + L+R +P+ ++AP LPS +A P+P ++ P
Sbjct: 993 SAPLSKPVSTSPAAPLARV----PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048
Query: 655 TRAIPRRS 678
T +P+ S
Sbjct: 1049 TPPVPKSS 1056
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Frame = +1
Query: 556 LPRQGARAPALPSREARPLPRQGSSAP--TLPRGETRAIPRRS*VPYAAYPL*TRRCP 723
L + + +PA P P+P+ S AP LP + IP S P P T P
Sbjct: 996 LSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVP 1053
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 371 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 478
+ YPV + P V V Q YEV V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 159 VVSXNLGYGYGIDGLDVGYIG--HGQGLGGAYNYVDGGYSSGYG 284
+ S + G G D + + + HG+GL YN++ +SG G
Sbjct: 270 IASNSESCGIGCDNMTICIVAFLHGRGLEDWYNWITQRVNSGEG 313
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 565 QGARAPALPSREARPLPRQGSSAPTLPRGETRAIPRRS*VP 687
QG +PA LP QGS P ET++ ++ P
Sbjct: 511 QGLPSPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTP 551
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = +1
Query: 457 SREGVR*GSRPRSRAIPSRKEGALSRTRT-S*QALPRQGARAPALPSREARPLPRQGSSA 633
S + +R GS RSR+ PS + G R+ + S ++P A +P PR+
Sbjct: 335 SSQSLRLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKPTPDGFPRRFERD 393
Query: 634 PTLPRGETRAIPR 672
PT+P + R
Sbjct: 394 PTIPPDSIKVYSR 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,517
Number of Sequences: 5004
Number of extensions: 49411
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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