Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F23
         (993 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1794 - 29580767-29584189                                         38   0.016
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910...    31   1.1  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    30   2.5  
06_01_0626 + 4549661-4550947                                           30   2.5  

>07_03_1794 - 29580767-29584189
          Length = 1140

 Score = 37.5 bits (83), Expect = 0.016
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
 Frame = +1

Query: 76  YLRIK---MNSALNPDAPEFYPHLAAVTQEGYRSVNKTIKSSNQLPMSSSYDLFKTYPEF 246
           YLR K   MN  ++P   E      AV    Y +  + ++      +   Y+  + + E 
Sbjct: 222 YLRQKLYAMNYIIDPSKGEVGTTNIAVKNRVYPNTQEILE------LQPIYEKIEKFFEL 275

Query: 247 NEISNQISQNVAQQSNELIGTEQPAVKLKCEDFTSNIEKLADVNDSLLDRINISIDTVSG 426
           N  S  + Q +A++ +EL+      ++LK    ++ I++L + NDSL DR++   D ++ 
Sbjct: 276 N--SESVVQEMAERVDELVDKVMN-LELKFPKQSAQIKQLKEDNDSLKDRLDDLQDEIAL 332

Query: 427 ENLPSEAFAS-GLNDNPSHNSSPWNKPVISEKKMGSTIF 540
            + PS+      L ++  +      + VI E+ + ST+F
Sbjct: 333 RDDPSDLSEQLKLAEDELNRVKALERSVIEEEVLVSTVF 371


>03_06_0520 -
           34487664-34488274,34488785-34488974,34489585-34491045,
           34491149-34491163
          Length = 758

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
 Frame = +1

Query: 289 SNELIGTEQPAV-KLKCE-DFTSN-IEKLADVNDSLLDRIN-ISID-TVSGENLPSEAFA 453
           S  L+GT+   V ++K E   TSN ++ L    DS LD+ N +  D T S +   S    
Sbjct: 225 SQNLLGTKDINVPRIKGERHLTSNAVDSLLKRQDSSLDQYNTVDTDNTGSSQKCVSSEVN 284

Query: 454 SGLNDNPSHNSSPW 495
           S  ++  S NSSPW
Sbjct: 285 SRKSNRSSSNSSPW 298


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -2

Query: 695 ISNSFAFSYTKCXSQRLDVVWFV*ILGTHKFSELSIVSLKVS 570
           I+ +F    T C  Q+ D+   V +LGTHK +E   V  K +
Sbjct: 534 ITGAFVRIRTPCVGQKQDIYRLVKVLGTHKVAERYSVGKKTT 575


>06_01_0626 + 4549661-4550947
          Length = 428

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 481 NSSPWNKPVISEKKMGSTIFIGTKNIPRPQLTFKDTID 594
           +S+PW     +EK+  +T+ IGT  +P P + F+ + +
Sbjct: 57  DSTPWAGADNNEKEAAATLKIGTIQLPTPIMNFRSSAE 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.129    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,204,453
Number of Sequences: 37544
Number of extensions: 360752
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2905255520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)