Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F21
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0298 - 7061908-7061913,7061952-7062032,7062363-7062564,706...    29   3.6  
07_01_0729 - 5560405-5561235                                           29   4.8  
06_03_0957 + 26307062-26308987                                         29   4.8  
03_05_0461 + 24549079-24550464                                         29   6.3  

>09_02_0298 -
           7061908-7061913,7061952-7062032,7062363-7062564,
           7062665-7062890,7063030-7063143,7063213-7063270
          Length = 228

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -1

Query: 294 LSTSSQSVQHTMGS--LPRSPHTGGNDLXPVVQDERLAALAKHARAVEPAADTRGPF 130
           L +SS  +Q   GS   P S  TGGN       ++R+ A+ K    VEP A+ + PF
Sbjct: 46  LPSSSMEIQWVGGSEVAPPSVSTGGNTELVEQGNDRVPAMTKIV--VEPNAELQSPF 100


>07_01_0729 - 5560405-5561235
          Length = 276

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 383 SERNRYKRPKIFYLFFRVGCISSSGICYRCCPRAHSR 273
           +E+NR +R +   L  R     ++ + +R CPR H+R
Sbjct: 236 AEKNRRRRARTMLLLRRQRRRGTAAVAHRRCPRRHAR 272


>06_03_0957 + 26307062-26308987
          Length = 641

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 311 LTRRYSRLEKTNKKSWDACIDYVLNIPEYFCTSTVTFNFNKAWDSE 448
           LT  YS    T   S D C+D+  N+      STVT   + AW +E
Sbjct: 64  LTENYS---PTFASSGDPCLDFFFNVVPDTHASTVTSLLSAAWTAE 106


>03_05_0461 + 24549079-24550464
          Length = 461

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 290 PRAHSRCSTRWAPCRAARTPAG 225
           PR H      WAP RAA  P G
Sbjct: 76  PRPHRAADVAWAPIRAAAAPLG 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,032,491
Number of Sequences: 37544
Number of extensions: 336490
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)