Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FWDP02_FL5_F19
         (848 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   155   6e-39
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   146   5e-36
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    85   2e-17
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    77   3e-15
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   7.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   7.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.8  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   7.8  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  155 bits (377), Expect = 6e-39
 Identities = 67/96 (69%), Positives = 78/96 (81%)
 Frame = +3

Query: 102 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 281
           MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 282 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITDR 389
           +VPR+++VDLEP V+D+VRTG YR LFHPEQLIT +
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGK 96


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  146 bits (353), Expect = 5e-36
 Identities = 68/101 (67%), Positives = 79/101 (78%), Gaps = 5/101 (4%)
 Frame = +3

Query: 102 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 266
           MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG  PT+     K     +D F TFFSE
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59

Query: 267 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITDR 389
           TG GK VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++T +
Sbjct: 60  TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGK 100


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 84.6 bits (200), Expect = 2e-17
 Identities = 38/92 (41%), Positives = 59/92 (64%)
 Frame = +3

Query: 105 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 284
           RE I++  GQ G QIG+  W+  CLEHGI PDG + +  T   G D  + FF ++   ++
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60

Query: 285 VPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 380
           +PRA+ +DLEP VV+ + + TY  L++PE ++
Sbjct: 61  IPRAILIDLEPRVVNNILSDTYGSLYNPENIL 92


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 77.0 bits (181), Expect = 3e-15
 Identities = 37/93 (39%), Positives = 51/93 (54%)
 Frame = +3

Query: 102 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 281
           MRE + +  GQ G Q+G A W     EHG+   G      T     +  N +F+E   GK
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58

Query: 282 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLI 380
           +VPRAV VDLEP  +D V++G +  LF P+ +I
Sbjct: 59  YVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNII 91


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 181 STASSLMARCPQTRPSGVETILSTLSSARPELAST 285
           ST SSL +    ++PS   T  ST SSA P   S+
Sbjct: 173 STFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSS 207


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 470 IGLSVVPVWNKSPLLRTWTPTSKGEKPSISNKL 372
           I   +VPVW K   +     +S    PS+SNKL
Sbjct: 122 IEADIVPVWGKVQRVPQAKSSSATITPSVSNKL 154


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 544 VKSAHFLTNRPKSAKSLINQKNRP 473
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 200 WPDAHRQDHRGWRRFFQHFLQR 265
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,491
Number of Sequences: 5004
Number of extensions: 53138
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)