Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FWDP02_FL5_F18
(850 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 1.2
04_04_0063 - 22441549-22442961 30 2.0
04_01_0154 - 1775693-1775942,1776834-1777588 30 2.0
03_06_0316 + 33091194-33091370,33091451-33092155 29 3.5
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 4.7
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 29 4.7
01_01_0903 - 7103091-7103120,7104092-7104651,7105208-7105328,710... 29 4.7
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 8.2
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 28 8.2
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 8.2
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -3
Query: 446 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 303
V+T SA S +S A AAAA G T + + SA+ GNAAS A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154
>04_04_0063 - 22441549-22442961
Length = 470
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -3
Query: 443 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTTNSN 270
+T +AT S + A+TA+ A S+R VS+AKG AAS + T + T S+
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRTPSS 369
Query: 269 SSVSAAD 249
S +
Sbjct: 370 RRYSIGE 376
>04_01_0154 - 1775693-1775942,1776834-1777588
Length = 334
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -3
Query: 395 TAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTNSNSSVSAADRGRA 237
TAA G +T S RR +GN A R ++ G++ ++V GRA
Sbjct: 126 TAARQDGGATRRNSSRRRRPRWRGNVARRSSSAGTQRRLTGQTAVGDGGEGRA 178
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 3.5
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -3
Query: 446 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 303
++T ++ATE + +E AAA + +T + + AK AA RKA
Sbjct: 1 MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -3
Query: 461 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 303
KRST+ S+ S+ + A AAA STT T + S+A AA+ A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 696 NSSTHSALKTGSLLHQISNPXGIWW 770
N HSAL+ G L++I N GI W
Sbjct: 682 NKDDHSALQNGYTLNEIDNDVGIAW 706
>01_01_0903 -
7103091-7103120,7104092-7104651,7105208-7105328,
7105545-7106567
Length = 577
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 494 PRTS*AKTSSYPCCGSTPETLQDHLHQGPNSSHSYCPHNSYPTTKRREDTRICTG 658
P+T AK S + +++ G SS PH++Y + R+DT+ TG
Sbjct: 226 PQTRAAKDIKVVSHTSRKQQIKETTEMGRRSSDKQRPHSTYRNREGRKDTKSKTG 280
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 489 PPPEPVEQRLPRIPAVAPPQ 548
PP +P+ LP+ PA PPQ
Sbjct: 555 PPHDPLAPSLPQAPAATPPQ 574
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 28.3 bits (60), Expect = 8.2
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = +1
Query: 673 EQPDIIIPTPAPTQPSKP 726
E+PD+ +P+PAP+ S+P
Sbjct: 79 EEPDVDLPSPAPSTTSRP 96
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 456 PLVQKHIYVHVPPPEPVEQRLPRIPAVAPPQ 548
P+++ H VHVP P P +P V P Q
Sbjct: 45 PVMRSHHVVHVPLPRPAVAVAVPVPQVRPAQ 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,178,166
Number of Sequences: 37544
Number of extensions: 322136
Number of successful extensions: 1718
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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